JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PREX1_chr20_48619252_48832999	0/0	c0004	4980	30	0	5	18	2	5	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	c0005	4980	18	6	7	2	0	3	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	c0006	4980	8	0	0	8	0	0	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	c0007	4980	4	0	0	4	0	0	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	c0008	4980	4	4	0	0	0	0	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	c0009	4980	3	0	1	0	1	1	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	c0010	4980	3	3	0	0	0	0	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	c0011	4980	3	3	0	0	0	0	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	c0012	4980	3	2	1	0	0	0	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	c0013	4980	3	0	1	1	0	1	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	c0014	4980	2	0	2	0	0	0	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	c0015	4980	2	0	0	2	0	0	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	c0016	4980	2	2	0	0	0	0	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	c0017	4980	2	2	0	0	0	0	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	c0018	4980	2	0	0	2	0	0	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	c0019	4980	2	0	0	0	0	2	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	c0020	4980	2	0	1	0	1	0	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	c0021	4980	1	0	0	1	0	0	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	c0022	4980	1	0	0	1	0	0	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	c0023	4980	1	1	0	0	0	0	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	c0024	4980	1	0	0	1	0	0	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	c0025	4980	1	1	0	0	0	0	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	c0026	4980	1	1	0	0	0	0	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	1/0	c0027	4980	1	0	0	0	0	0	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	c0028	4980	1	1	0	0	0	0	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	c0029	4980	1	1	0	0	0	0	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	c0030	4980	1	1	0	0	0	0	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	c0031	4980	1	0	0	0	0	1	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	c0032	4980	1	0	0	0	0	1	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	c0033	4980	1	0	0	0	0	1	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	c0034	4980	1	0	0	0	1	0	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	c0035	4980	1	1	0	0	0	0	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	c0036	4980	1	1	0	0	0	0	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	c0037	4980	1	1	0	0	0	0	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	c0038	4980	1	0	0	0	0	1	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	c0039	4980	1	0	0	1	0	0	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	c0040	4980	1	0	0	1	0	0	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	c0041	4980	1	0	1	0	0	0	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	c0042	4980	1	0	0	0	0	1	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	c0043	4980	1	0	0	0	0	1	copy fasta	PREX1	chr20	48619252	48832999
PREX2_chr8_67947046_68242032	0/0	c0001	4821	18	7	7	4	0	0	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	c0002	4821	13	8	1	2	1	1	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	c0003	4821	13	8	1	1	0	3	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	c0004	4821	8	7	1	0	0	0	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	c0005	4821	6	3	1	1	0	1	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	c0006	4821	5	0	2	2	1	0	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	c0007	4821	5	3	1	1	0	0	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	c0008	4821	5	0	1	4	0	0	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	1/0	c0009	4821	5	1	2	1	0	0	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	c0010	4821	5	0	1	2	1	1	copy fasta	PREX2	chr8	67947046	68242032