JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ARSB_chr5_78772209_78990310	0/0	c0022	1602	1	1	0	0	0	0	copy fasta	ARSB	chr5	78772209	78990310
ARSD_chrX_2898972_2934339	0/1	c0001	1782	117	31	33	37	6	9	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	1/0	c0002	1782	100	9	13	49	6	22	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	c0003	1782	57	4	4	47	1	1	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	c0004	1782	18	4	1	13	0	0	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	c0005	1782	15	11	4	0	0	0	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	c0006	1782	8	7	1	0	0	0	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	c0007	1782	7	6	1	0	0	0	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	c0008	1782	3	1	2	0	0	0	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	c0009	1782	3	0	0	3	0	0	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	c0010	1782	2	2	0	0	0	0	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	c0011	1782	2	0	0	2	0	0	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	c0012	1782	1	1	0	0	0	0	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	c0013	1781	1	0	0	1	0	0	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	c0014	1782	1	0	0	1	0	0	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	c0015	1782	1	1	0	0	0	0	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	c0016	1782	1	0	0	1	0	0	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	c0017	1782	1	0	1	0	0	0	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	c0018	1782	1	1	0	0	0	0	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	c0019	1782	1	0	0	1	0	0	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	c0020	1782	1	1	0	0	0	0	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	c0021	1782	1	1	0	0	0	0	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	c0022	1783	1	0	0	1	0	0	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	c0023	1783	1	0	0	1	0	0	copy fasta	ARSD	chrX	2898972	2934339
ARSF_chrX_3036471_3117727	0/0	c0001	1773	140	18	21	73	8	20	copy fasta	ARSF	chrX	3036471	3117727
ARSF_chrX_3036471_3117727	1/1	c0002	1773	15	4	4	1	2	2	copy fasta	ARSF	chrX	3036471	3117727
ARSF_chrX_3036471_3117727	0/0	c0003	1773	5	1	3	1	0	0	copy fasta	ARSF	chrX	3036471	3117727
ARSF_chrX_3036471_3117727	0/0	c0004	1773	4	1	2	0	1	0	copy fasta	ARSF	chrX	3036471	3117727
ARSF_chrX_3036471_3117727	0/0	c0005	1773	4	4	0	0	0	0	copy fasta	ARSF	chrX	3036471	3117727
ARSF_chrX_3036471_3117727	0/0	c0006	1773	3	1	2	0	0	0	copy fasta	ARSF	chrX	3036471	3117727
ARSF_chrX_3036471_3117727	0/0	c0007	1773	2	2	0	0	0	0	copy fasta	ARSF	chrX	3036471	3117727
ARSF_chrX_3036471_3117727	0/0	c0008	1773	2	2	0	0	0	0	copy fasta	ARSF	chrX	3036471	3117727
ARSF_chrX_3036471_3117727	0/0	c0009	1823	2	0	0	0	0	2	copy fasta	ARSF	chrX	3036471	3117727
ARSF_chrX_3036471_3117727	0/0	c0010	1773	2	2	0	0	0	0	copy fasta	ARSF	chrX	3036471	3117727
ARSF_chrX_3036471_3117727	0/0	c0011	1773	2	2	0	0	0	0	copy fasta	ARSF	chrX	3036471	3117727
ARSF_chrX_3036471_3117727	0/0	c0012	1773	1	1	0	0	0	0	copy fasta	ARSF	chrX	3036471	3117727
ARSF_chrX_3036471_3117727	0/0	c0013	1773	1	1	0	0	0	0	copy fasta	ARSF	chrX	3036471	3117727
ARSF_chrX_3036471_3117727	0/0	c0014	1752	1	1	0	0	0	0	copy fasta	ARSF	chrX	3036471	3117727
ARSF_chrX_3036471_3117727	0/0	c0015	1773	1	0	0	0	0	1	copy fasta	ARSF	chrX	3036471	3117727
ARSF_chrX_3036471_3117727	0/0	c0016	1773	1	1	0	0	0	0	copy fasta	ARSF	chrX	3036471	3117727
ARSF_chrX_3036471_3117727	0/0	c0017	1773	1	0	1	0	0	0	copy fasta	ARSF	chrX	3036471	3117727
ARSF_chrX_3036471_3117727	0/0	c0018	1752	1	1	0	0	0	0	copy fasta	ARSF	chrX	3036471	3117727
ARSF_chrX_3036471_3117727	0/0	c0019	1775	1	0	0	1	0	0	copy fasta	ARSF	chrX	3036471	3117727
ARSF_chrX_3036471_3117727	0/0	c0020	1773	1	0	0	0	0	1	copy fasta	ARSF	chrX	3036471	3117727
ARSF_chrX_3036471_3117727	0/0	c0021	1773	1	0	0	1	0	0	copy fasta	ARSF	chrX	3036471	3117727
ARSF_chrX_3036471_3117727	0/0	c0022	1773	1	0	0	1	0	0	copy fasta	ARSF	chrX	3036471	3117727
ARSF_chrX_3036471_3117727	0/0	c0023	1773	1	1	0	0	0	0	copy fasta	ARSF	chrX	3036471	3117727
ARSG_chr17_68286495_68425814	1/1	c0001	1578	93	12	22	42	5	10	copy fasta	ARSG	chr17	68286495	68425814
ARSG_chr17_68286495_68425814	0/0	c0002	1578	53	16	18	7	3	9	copy fasta	ARSG	chr17	68286495	68425814
ARSG_chr17_68286495_68425814	0/0	c0003	1578	30	15	7	2	0	6	copy fasta	ARSG	chr17	68286495	68425814