JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PREX2_chr8_67947046_68242032	0/0	c0061	4821	1	1	0	0	0	0	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	c0062	4821	1	0	0	0	0	1	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	c0063	4821	1	0	0	1	0	0	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/1	c0064	4821	1	0	0	0	0	0	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	c0065	4821	1	1	0	0	0	0	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	c0066	4821	1	1	0	0	0	0	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	c0067	4821	1	1	0	0	0	0	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	c0068	4821	1	0	0	1	0	0	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	c0069	4821	1	1	0	0	0	0	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	c0070	4821	1	1	0	0	0	0	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	c0071	4821	1	0	0	1	0	0	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	c0072	4821	1	0	0	0	0	1	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	c0073	4821	1	0	0	1	0	0	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	c0074	4821	1	1	0	0	0	0	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	c0075	4821	1	0	1	0	0	0	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	c0076	4821	1	0	0	0	0	1	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	c0077	4821	1	1	0	0	0	0	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	c0078	4821	1	0	0	1	0	0	copy fasta	PREX2	chr8	67947046	68242032
PRF1_chr10_70592348_70607741	0/1	c0001	1668	224	51	29	112	8	23	copy fasta	PRF1	chr10	70592348	70607741
PRF1_chr10_70592348_70607741	1/0	c0002	1668	130	15	33	60	6	15	copy fasta	PRF1	chr10	70592348	70607741
PRF1_chr10_70592348_70607741	0/0	c0003	1668	39	3	11	20	2	3	copy fasta	PRF1	chr10	70592348	70607741
PRF1_chr10_70592348_70607741	0/0	c0004	1668	7	7	0	0	0	0	copy fasta	PRF1	chr10	70592348	70607741
PRF1_chr10_70592348_70607741	0/0	c0005	1668	5	5	0	0	0	0	copy fasta	PRF1	chr10	70592348	70607741
PRF1_chr10_70592348_70607741	0/0	c0006	1668	5	5	0	0	0	0	copy fasta	PRF1	chr10	70592348	70607741
PRF1_chr10_70592348_70607741	0/0	c0007	1668	4	0	2	0	2	0	copy fasta	PRF1	chr10	70592348	70607741
PRF1_chr10_70592348_70607741	0/0	c0008	1668	3	3	0	0	0	0	copy fasta	PRF1	chr10	70592348	70607741
PRF1_chr10_70592348_70607741	0/0	c0009	1668	3	0	0	3	0	0	copy fasta	PRF1	chr10	70592348	70607741
PRF1_chr10_70592348_70607741	0/0	c0010	1668	3	3	0	0	0	0	copy fasta	PRF1	chr10	70592348	70607741
PRF1_chr10_70592348_70607741	0/0	c0011	1668	2	1	1	0	0	0	copy fasta	PRF1	chr10	70592348	70607741
PRF1_chr10_70592348_70607741	0/0	c0012	1668	2	0	0	0	0	2	copy fasta	PRF1	chr10	70592348	70607741
PRF1_chr10_70592348_70607741	0/0	c0013	1668	1	1	0	0	0	0	copy fasta	PRF1	chr10	70592348	70607741
PRF1_chr10_70592348_70607741	0/0	c0014	1668	1	0	1	0	0	0	copy fasta	PRF1	chr10	70592348	70607741
PRF1_chr10_70592348_70607741	0/0	c0015	1668	1	1	0	0	0	0	copy fasta	PRF1	chr10	70592348	70607741
PRF1_chr10_70592348_70607741	0/0	c0016	1668	1	0	0	0	0	1	copy fasta	PRF1	chr10	70592348	70607741
PRF1_chr10_70592348_70607741	0/0	c0017	1668	1	1	0	0	0	0	copy fasta	PRF1	chr10	70592348	70607741
PRF1_chr10_70592348_70607741	0/0	c0018	1668	1	0	0	0	0	1	copy fasta	PRF1	chr10	70592348	70607741
PRF1_chr10_70592348_70607741	0/0	c0019	1668	1	0	0	0	0	1	copy fasta	PRF1	chr10	70592348	70607741
PRF1_chr10_70592348_70607741	0/0	c0020	1668	1	0	0	1	0	0	copy fasta	PRF1	chr10	70592348	70607741
PRF1_chr10_70592348_70607741	0/0	c0021	1668	1	0	0	1	0	0	copy fasta	PRF1	chr10	70592348	70607741
PRF1_chr10_70592348_70607741	0/0	c0022	1668	1	1	0	0	0	0	copy fasta	PRF1	chr10	70592348	70607741
PRF1_chr10_70592348_70607741	0/0	c0023	1668	1	1	0	0	0	0	copy fasta	PRF1	chr10	70592348	70607741
PRF1_chr10_70592348_70607741	0/0	c0024	1668	1	0	0	1	0	0	copy fasta	PRF1	chr10	70592348	70607741
PRF1_chr10_70592348_70607741	0/0	c0025	1668	1	0	1	0	0	0	copy fasta	PRF1	chr10	70592348	70607741
PRF1_chr10_70592348_70607741	0/0	c0026	1668	1	0	1	0	0	0	copy fasta	PRF1	chr10	70592348	70607741
PRF1_chr10_70592348_70607741	0/0	c0027	1668	1	0	1	0	0	0	copy fasta	PRF1	chr10	70592348	70607741
PRG2_chr11_57381780_57395650	0/1	c0001	669	263	36	54	123	13	36	copy fasta	PRG2	chr11	57381780	57395650
PRG2_chr11_57381780_57395650	0/0	c0002	669	85	8	10	58	5	4	copy fasta	PRG2	chr11	57381780	57395650
PRG2_chr11_57381780_57395650	0/0	c0003	669	18	14	1	3	0	0	copy fasta	PRG2	chr11	57381780	57395650
PRG2_chr11_57381780_57395650	0/0	c0004	669	11	11	0	0	0	0	copy fasta	PRG2	chr11	57381780	57395650
PRG2_chr11_57381780_57395650	0/0	c0005	669	7	7	0	0	0	0	copy fasta	PRG2	chr11	57381780	57395650