JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRG2_chr11_57381780_57395650	1/0	c0006	669	7	6	0	0	0	0	copy fasta	PRG2	chr11	57381780	57395650
PRG2_chr11_57381780_57395650	0/0	c0007	669	6	6	0	0	0	0	copy fasta	PRG2	chr11	57381780	57395650
PRG2_chr11_57381780_57395650	0/0	c0008	669	3	3	0	0	0	0	copy fasta	PRG2	chr11	57381780	57395650
PRG2_chr11_57381780_57395650	0/0	c0009	669	2	2	0	0	0	0	copy fasta	PRG2	chr11	57381780	57395650
PRG2_chr11_57381780_57395650	0/0	c0010	669	1	0	1	0	0	0	copy fasta	PRG2	chr11	57381780	57395650
PRG2_chr11_57381780_57395650	0/0	c0011	669	1	1	0	0	0	0	copy fasta	PRG2	chr11	57381780	57395650
PRG3_chr11_57371769_57386150	0/1	c0001	678	352	76	66	157	15	37	copy fasta	PRG3	chr11	57371769	57386150
PRG3_chr11_57371769_57386150	1/0	c0002	678	19	17	1	0	0	0	copy fasta	PRG3	chr11	57371769	57386150
PRG3_chr11_57371769_57386150	0/0	c0003	678	9	1	6	0	1	1	copy fasta	PRG3	chr11	57371769	57386150
PRG3_chr11_57371769_57386150	0/0	c0004	678	6	0	0	6	0	0	copy fasta	PRG3	chr11	57371769	57386150
PRG3_chr11_57371769_57386150	0/0	c0005	678	4	1	1	0	2	0	copy fasta	PRG3	chr11	57371769	57386150
PRG3_chr11_57371769_57386150	0/0	c0006	678	3	0	0	3	0	0	copy fasta	PRG3	chr11	57371769	57386150
PRG3_chr11_57371769_57386150	0/0	c0007	678	2	0	2	0	0	0	copy fasta	PRG3	chr11	57371769	57386150
PRG3_chr11_57371769_57386150	0/0	c0008	678	1	1	0	0	0	0	copy fasta	PRG3	chr11	57371769	57386150
PRG4_chr1_186291279_186319567	1/0	c0001	4215	226	35	36	122	7	25	copy fasta	PRG4	chr1	186291279	186319567
PRG4_chr1_186291279_186319567	0/1	c0002	4215	60	12	21	13	3	10	copy fasta	PRG4	chr1	186291279	186319567
PRG4_chr1_186291279_186319567	0/0	c0003	4191	51	6	4	31	3	7	copy fasta	PRG4	chr1	186291279	186319567
PRG4_chr1_186291279_186319567	0/0	c0004	4215	18	18	0	0	0	0	copy fasta	PRG4	chr1	186291279	186319567
PRG4_chr1_186291279_186319567	0/0	c0005	4215	9	0	9	0	0	0	copy fasta	PRG4	chr1	186291279	186319567
PRG4_chr1_186291279_186319567	0/0	c0006	4215	7	0	0	7	0	0	copy fasta	PRG4	chr1	186291279	186319567
PRG4_chr1_186291279_186319567	0/0	c0007	4215	5	5	0	0	0	0	copy fasta	PRG4	chr1	186291279	186319567
PRG4_chr1_186291279_186319567	0/0	c0008	4215	4	4	0	0	0	0	copy fasta	PRG4	chr1	186291279	186319567
PRG4_chr1_186291279_186319567	0/0	c0009	4215	3	3	0	0	0	0	copy fasta	PRG4	chr1	186291279	186319567
PRG4_chr1_186291279_186319567	0/0	c0010	4215	3	0	0	3	0	0	copy fasta	PRG4	chr1	186291279	186319567
PRG4_chr1_186291279_186319567	0/0	c0011	4215	3	0	0	3	0	0	copy fasta	PRG4	chr1	186291279	186319567
PRG4_chr1_186291279_186319567	0/0	c0012	4191	3	0	3	0	0	0	copy fasta	PRG4	chr1	186291279	186319567
PRG4_chr1_186291279_186319567	0/0	c0013	4215	3	0	0	0	1	2	copy fasta	PRG4	chr1	186291279	186319567
PRG4_chr1_186291279_186319567	0/0	c0014	4215	3	2	1	0	0	0	copy fasta	PRG4	chr1	186291279	186319567
PRG4_chr1_186291279_186319567	0/0	c0015	4191	2	2	0	0	0	0	copy fasta	PRG4	chr1	186291279	186319567
PRG4_chr1_186291279_186319567	0/0	c0016	4215	2	0	0	0	0	2	copy fasta	PRG4	chr1	186291279	186319567
PRG4_chr1_186291279_186319567	0/0	c0017	4215	2	2	0	0	0	0	copy fasta	PRG4	chr1	186291279	186319567
PRG4_chr1_186291279_186319567	0/0	c0018	4215	2	0	0	0	0	2	copy fasta	PRG4	chr1	186291279	186319567
PRG4_chr1_186291279_186319567	0/0	c0019	4215	2	0	0	2	0	0	copy fasta	PRG4	chr1	186291279	186319567
PRG4_chr1_186291279_186319567	0/0	c0020	4191	2	0	0	2	0	0	copy fasta	PRG4	chr1	186291279	186319567
PRG4_chr1_186291279_186319567	0/0	c0021	4215	1	0	0	1	0	0	copy fasta	PRG4	chr1	186291279	186319567
PRG4_chr1_186291279_186319567	0/0	c0022	4215	1	1	0	0	0	0	copy fasta	PRG4	chr1	186291279	186319567
PRG4_chr1_186291279_186319567	0/0	c0023	4143	1	1	0	0	0	0	copy fasta	PRG4	chr1	186291279	186319567
PRG4_chr1_186291279_186319567	0/0	c0024	4191	1	0	1	0	0	0	copy fasta	PRG4	chr1	186291279	186319567
PRG4_chr1_186291279_186319567	0/0	c0025	4170	1	0	0	1	0	0	copy fasta	PRG4	chr1	186291279	186319567
PRG4_chr1_186291279_186319567	0/0	c0026	4215	1	0	1	0	0	0	copy fasta	PRG4	chr1	186291279	186319567
PRG4_chr1_186291279_186319567	0/0	c0027	4167	1	0	0	1	0	0	copy fasta	PRG4	chr1	186291279	186319567
PRG4_chr1_186291279_186319567	0/0	c0028	4191	1	0	1	0	0	0	copy fasta	PRG4	chr1	186291279	186319567
PRG4_chr1_186291279_186319567	0/0	c0029	4215	1	0	0	1	0	0	copy fasta	PRG4	chr1	186291279	186319567
PRG4_chr1_186291279_186319567	0/0	c0030	4215	1	0	1	0	0	0	copy fasta	PRG4	chr1	186291279	186319567
PRG4_chr1_186291279_186319567	0/0	c0031	4215	1	0	1	0	0	0	copy fasta	PRG4	chr1	186291279	186319567
PRG4_chr1_186291279_186319567	0/0	c0032	4215	1	0	0	1	0	0	copy fasta	PRG4	chr1	186291279	186319567
PRG4_chr1_186291279_186319567	0/0	c0033	4008	1	0	0	1	0	0	copy fasta	PRG4	chr1	186291279	186319567
PRG4_chr1_186291279_186319567	0/0	c0034	4239	1	1	0	0	0	0	copy fasta	PRG4	chr1	186291279	186319567
PRG4_chr1_186291279_186319567	0/0	c0035	4167	1	1	0	0	0	0	copy fasta	PRG4	chr1	186291279	186319567
PRG4_chr1_186291279_186319567	0/0	c0036	4215	1	1	0	0	0	0	copy fasta	PRG4	chr1	186291279	186319567