JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRG4_chr1_186291279_186319567	0/0	c0037	4215	1	0	1	0	0	0	copy fasta	PRG4	chr1	186291279	186319567
PRG4_chr1_186291279_186319567	0/0	c0038	4215	1	0	0	1	0	0	copy fasta	PRG4	chr1	186291279	186319567
PRH1_chr12_10875965_10889255	0/0	c0001	501	219	20	44	120	10	25	copy fasta	PRH1	chr12	10875965	10889255
PRH1_chr12_10875965_10889255	0/0	c0002	564	97	53	23	11	4	6	copy fasta	PRH1	chr12	10875965	10889255
PRH1_chr12_10875965_10889255	0/1	c0003	501	65	14	10	35	0	5	copy fasta	PRH1	chr12	10875965	10889255
PRH1_chr12_10875965_10889255	0/0	c0004	501	8	0	7	0	1	0	copy fasta	PRH1	chr12	10875965	10889255
PRH1_chr12_10875965_10889255	0/0	c0005	501	5	5	0	0	0	0	copy fasta	PRH1	chr12	10875965	10889255
PRH1_chr12_10875965_10889255	0/0	c0006	501	1	0	0	0	1	0	copy fasta	PRH1	chr12	10875965	10889255
PRH1_chr12_10875965_10889255	0/0	c0007	501	1	0	0	1	0	0	copy fasta	PRH1	chr12	10875965	10889255
PRH1_chr12_10875965_10889255	0/0	c0008	501	1	0	0	1	0	0	copy fasta	PRH1	chr12	10875965	10889255
PRH2_chr12_10924236_10939845	0/0	c0001	501	276	56	61	114	14	31	copy fasta	PRH2	chr12	10924236	10939845
PRH2_chr12_10924236_10939845	0/1	c0002	501	86	24	17	31	2	11	copy fasta	PRH2	chr12	10924236	10939845
PRH2_chr12_10924236_10939845	0/0	c0003	501	13	9	4	0	0	0	copy fasta	PRH2	chr12	10924236	10939845
PRH2_chr12_10924236_10939845	0/0	c0004	501	7	0	0	7	0	0	copy fasta	PRH2	chr12	10924236	10939845
PRH2_chr12_10924236_10939845	0/0	c0005	501	3	2	0	1	0	0	copy fasta	PRH2	chr12	10924236	10939845
PRH2_chr12_10924236_10939845	0/0	c0006	450	1	1	0	0	0	0	copy fasta	PRH2	chr12	10924236	10939845
PRH2_chr12_10924236_10939845	0/0	c0007	501	1	0	0	1	0	0	copy fasta	PRH2	chr12	10924236	10939845
PRICKLE1_chr12_42451757_42594746	1/0	c0001	2496	161	29	33	73	5	20	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/1	c0002	2496	62	13	15	25	3	5	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	c0003	2496	34	20	4	3	2	5	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	c0004	2496	11	0	2	8	0	1	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	c0005	2496	10	8	2	0	0	0	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	c0006	2496	9	0	2	7	0	0	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	c0007	2496	2	0	0	0	0	2	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	c0008	2496	1	1	0	0	0	0	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	c0009	2496	1	1	0	0	0	0	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	c0010	2496	1	0	1	0	0	0	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	c0011	2496	1	1	0	0	0	0	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	c0012	2496	1	0	0	1	0	0	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	c0013	2496	1	0	0	0	0	1	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	c0014	2496	1	1	0	0	0	0	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	c0015	2496	1	1	0	0	0	0	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	c0016	2496	1	0	1	0	0	0	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	c0017	2496	1	0	0	1	0	0	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	c0018	2496	1	1	0	0	0	0	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE2_chr3_64087236_64230466	0/1	c0001	2535	267	42	53	146	9	16	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	c0002	2535	37	25	5	0	3	4	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	c0003	2535	9	0	3	1	2	3	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	c0004	2535	6	5	1	0	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	1/0	c0005	2535	6	5	0	0	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	c0006	2535	5	4	0	1	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	c0007	2535	2	2	0	0	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	c0008	2535	1	1	0	0	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	c0009	2535	1	0	0	1	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	c0010	2535	1	1	0	0	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	c0011	2535	1	1	0	0	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	c0012	2535	1	0	0	1	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	c0013	2535	1	1	0	0	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	c0014	2535	1	1	0	0	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	c0015	2535	1	0	0	0	0	1	copy fasta	PRICKLE2	chr3	64087236	64230466