JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRICKLE3_chrX_49169802_49191373	1/1	c0001	1848	246	75	39	92	9	29	copy fasta	PRICKLE3	chrX	49169802	49191373
PRICKLE3_chrX_49169802_49191373	0/0	c0002	1848	12	0	8	0	2	2	copy fasta	PRICKLE3	chrX	49169802	49191373
PRICKLE3_chrX_49169802_49191373	0/0	c0003	1848	4	0	4	0	0	0	copy fasta	PRICKLE3	chrX	49169802	49191373
PRICKLE3_chrX_49169802_49191373	0/0	c0004	1848	3	3	0	0	0	0	copy fasta	PRICKLE3	chrX	49169802	49191373
PRICKLE3_chrX_49169802_49191373	0/0	c0005	1849	1	0	0	1	0	0	copy fasta	PRICKLE3	chrX	49169802	49191373
PRICKLE3_chrX_49169802_49191373	0/0	c0006	1847	1	0	0	1	0	0	copy fasta	PRICKLE3	chrX	49169802	49191373
PRICKLE3_chrX_49169802_49191373	0/0	c0007	1843	1	1	0	0	0	0	copy fasta	PRICKLE3	chrX	49169802	49191373
PRICKLE3_chrX_49169802_49191373	0/0	c0008	1848	1	0	0	1	0	0	copy fasta	PRICKLE3	chrX	49169802	49191373
PRICKLE3_chrX_49169802_49191373	0/0	c0009	1849	1	1	0	0	0	0	copy fasta	PRICKLE3	chrX	49169802	49191373
PRICKLE3_chrX_49169802_49191373	0/0	c0010	1848	1	0	0	0	0	1	copy fasta	PRICKLE3	chrX	49169802	49191373
PRICKLE3_chrX_49169802_49191373	0/0	c0011	1855	1	0	0	1	0	0	copy fasta	PRICKLE3	chrX	49169802	49191373
PRICKLE3_chrX_49169802_49191373	0/0	c0012	1849	1	0	0	1	0	0	copy fasta	PRICKLE3	chrX	49169802	49191373
PRICKLE4_chr6_41775782_41792452	0/1	c0001	1158	279	58	58	120	8	34	copy fasta	PRICKLE4	chr6	41775782	41792452
PRICKLE4_chr6_41775782_41792452	1/0	c0002	1155	82	26	9	35	4	7	copy fasta	PRICKLE4	chr6	41775782	41792452
PRICKLE4_chr6_41775782_41792452	0/0	c0003	1155	60	1	14	37	4	4	copy fasta	PRICKLE4	chr6	41775782	41792452
PRICKLE4_chr6_41775782_41792452	0/0	c0004	1158	6	6	0	0	0	0	copy fasta	PRICKLE4	chr6	41775782	41792452
PRICKLE4_chr6_41775782_41792452	0/0	c0005	1158	5	0	0	5	0	0	copy fasta	PRICKLE4	chr6	41775782	41792452
PRICKLE4_chr6_41775782_41792452	0/0	c0006	1158	4	0	0	4	0	0	copy fasta	PRICKLE4	chr6	41775782	41792452
PRICKLE4_chr6_41775782_41792452	0/0	c0007	1158	3	1	2	0	0	0	copy fasta	PRICKLE4	chr6	41775782	41792452
PRICKLE4_chr6_41775782_41792452	0/0	c0008	1158	2	2	0	0	0	0	copy fasta	PRICKLE4	chr6	41775782	41792452
PRICKLE4_chr6_41775782_41792452	0/0	c0009	1158	2	2	0	0	0	0	copy fasta	PRICKLE4	chr6	41775782	41792452
PRICKLE4_chr6_41775782_41792452	0/0	c0010	1155	2	2	0	0	0	0	copy fasta	PRICKLE4	chr6	41775782	41792452
PRICKLE4_chr6_41775782_41792452	0/0	c0011	1158	1	0	0	1	0	0	copy fasta	PRICKLE4	chr6	41775782	41792452
PRICKLE4_chr6_41775782_41792452	0/0	c0012	1158	1	1	0	0	0	0	copy fasta	PRICKLE4	chr6	41775782	41792452
PRICKLE4_chr6_41775782_41792452	0/0	c0013	1155	1	0	0	0	0	1	copy fasta	PRICKLE4	chr6	41775782	41792452
PRICKLE4_chr6_41775782_41792452	0/0	c0014	1158	1	0	0	1	0	0	copy fasta	PRICKLE4	chr6	41775782	41792452
PRICKLE4_chr6_41775782_41792452	0/0	c0015	1158	1	1	0	0	0	0	copy fasta	PRICKLE4	chr6	41775782	41792452
PRICKLE4_chr6_41775782_41792452	0/0	c0016	1155	1	0	0	1	0	0	copy fasta	PRICKLE4	chr6	41775782	41792452
PRICKLE4_chr6_41775782_41792452	0/0	c0017	1155	1	0	0	1	0	0	copy fasta	PRICKLE4	chr6	41775782	41792452
PRICKLE4_chr6_41775782_41792452	0/0	c0018	1155	1	0	0	1	0	0	copy fasta	PRICKLE4	chr6	41775782	41792452
PRICKLE4_chr6_41775782_41792452	0/0	c0019	1155	1	0	1	0	0	0	copy fasta	PRICKLE4	chr6	41775782	41792452
PRIM1_chr12_56726580_56757323	1/1	c0001	1263	163	60	30	55	7	9	copy fasta	PRIM1	chr12	56726580	56757323
PRIM1_chr12_56726580_56757323	0/0	c0002	1263	119	12	28	46	8	25	copy fasta	PRIM1	chr12	56726580	56757323
PRIM1_chr12_56726580_56757323	0/0	c0003	1263	48	16	3	27	0	2	copy fasta	PRIM1	chr12	56726580	56757323
PRIM1_chr12_56726580_56757323	0/0	c0004	1263	2	0	0	0	0	2	copy fasta	PRIM1	chr12	56726580	56757323
PRIM1_chr12_56726580_56757323	0/0	c0005	1263	2	1	0	0	1	0	copy fasta	PRIM1	chr12	56726580	56757323
PRIM1_chr12_56726580_56757323	0/0	c0006	1263	1	1	0	0	0	0	copy fasta	PRIM1	chr12	56726580	56757323
PRIM1_chr12_56726580_56757323	0/0	c0007	1263	1	0	1	0	0	0	copy fasta	PRIM1	chr12	56726580	56757323
PRIM2_chr6_57312630_57651850	1/1	c0001	1530	201	70	25	81	8	15	copy fasta	PRIM2	chr6	57312630	57651850
PRIM2_chr6_57312630_57651850	0/0	c0002	1530	68	6	12	41	3	6	copy fasta	PRIM2	chr6	57312630	57651850
PRIM2_chr6_57312630_57651850	0/0	c0003	1530	24	2	12	7	1	2	copy fasta	PRIM2	chr6	57312630	57651850
PRIM2_chr6_57312630_57651850	0/0	c0004	1530	3	2	1	0	0	0	copy fasta	PRIM2	chr6	57312630	57651850
PRIM2_chr6_57312630_57651850	0/0	c0005	1530	2	2	0	0	0	0	copy fasta	PRIM2	chr6	57312630	57651850
PRIM2_chr6_57312630_57651850	0/0	c0006	1530	1	0	0	0	0	1	copy fasta	PRIM2	chr6	57312630	57651850
PRIM2_chr6_57312630_57651850	0/0	c0007	1530	1	0	0	1	0	0	copy fasta	PRIM2	chr6	57312630	57651850
PRIMA1_chr14_93713298_93793485	0/0	c0001	462	120	25	6	77	0	12	copy fasta	PRIMA1	chr14	93713298	93793485
PRIMA1_chr14_93713298_93793485	0/0	c0002	462	71	12	15	37	2	5	copy fasta	PRIMA1	chr14	93713298	93793485
PRIMA1_chr14_93713298_93793485	0/0	c0003	462	70	23	10	30	1	6	copy fasta	PRIMA1	chr14	93713298	93793485
PRIMA1_chr14_93713298_93793485	0/0	c0004	462	65	12	24	16	5	8	copy fasta	PRIMA1	chr14	93713298	93793485
PRIMA1_chr14_93713298_93793485	0/0	c0005	462	38	11	8	8	5	6	copy fasta	PRIMA1	chr14	93713298	93793485