JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRKACG_chr9_69007504_69019113	0/0	c0007	1056	1	0	0	1	0	0	copy fasta	PRKACG	chr9	69007504	69019113
PRKACG_chr9_69007504_69019113	0/0	c0008	1056	1	1	0	0	0	0	copy fasta	PRKACG	chr9	69007504	69019113
PRKAG1_chr12_48997274_49023776	1/1	c0001	996	310	82	46	141	11	28	copy fasta	PRKAG1	chr12	48997274	49023776
PRKAG1_chr12_48997274_49023776	0/0	c0002	996	3	0	2	0	1	0	copy fasta	PRKAG1	chr12	48997274	49023776
PRKAG1_chr12_48997274_49023776	0/0	c0003	996	1	0	0	1	0	0	copy fasta	PRKAG1	chr12	48997274	49023776
PRKAG2_chr7_151551127_151882115	1/1	c0001	1710	224	59	50	72	12	29	copy fasta	PRKAG2	chr7	151551127	151882115
PRKAG2_chr7_151551127_151882115	0/0	c0002	1710	6	6	0	0	0	0	copy fasta	PRKAG2	chr7	151551127	151882115
PRKAG2_chr7_151551127_151882115	0/0	c0003	1710	4	0	1	3	0	0	copy fasta	PRKAG2	chr7	151551127	151882115
PRKAG2_chr7_151551127_151882115	0/0	c0004	1710	4	0	0	2	0	2	copy fasta	PRKAG2	chr7	151551127	151882115
PRKAG2_chr7_151551127_151882115	0/0	c0005	1710	3	0	0	3	0	0	copy fasta	PRKAG2	chr7	151551127	151882115
PRKAG2_chr7_151551127_151882115	0/0	c0006	1710	2	2	0	0	0	0	copy fasta	PRKAG2	chr7	151551127	151882115
PRKAG2_chr7_151551127_151882115	0/0	c0007	1710	2	0	0	0	0	2	copy fasta	PRKAG2	chr7	151551127	151882115
PRKAG2_chr7_151551127_151882115	0/0	c0008	1710	2	2	0	0	0	0	copy fasta	PRKAG2	chr7	151551127	151882115
PRKAG2_chr7_151551127_151882115	0/0	c0009	1710	1	0	0	1	0	0	copy fasta	PRKAG2	chr7	151551127	151882115
PRKAG2_chr7_151551127_151882115	0/0	c0010	1710	1	1	0	0	0	0	copy fasta	PRKAG2	chr7	151551127	151882115
PRKAG2_chr7_151551127_151882115	0/0	c0011	1710	1	0	0	0	0	1	copy fasta	PRKAG2	chr7	151551127	151882115
PRKAG2_chr7_151551127_151882115	0/0	c0012	1710	1	0	1	0	0	0	copy fasta	PRKAG2	chr7	151551127	151882115
PRKAG2_chr7_151551127_151882115	0/0	c0013	1710	1	0	0	1	0	0	copy fasta	PRKAG2	chr7	151551127	151882115
PRKAG3_chr2_218817308_218836803	1/1	c0001	1470	246	45	41	117	11	30	copy fasta	PRKAG3	chr2	218817308	218836803
PRKAG3_chr2_218817308_218836803	0/0	c0002	1470	79	3	22	50	0	4	copy fasta	PRKAG3	chr2	218817308	218836803
PRKAG3_chr2_218817308_218836803	0/0	c0003	1470	17	15	2	0	0	0	copy fasta	PRKAG3	chr2	218817308	218836803
PRKAG3_chr2_218817308_218836803	0/0	c0004	1470	14	13	1	0	0	0	copy fasta	PRKAG3	chr2	218817308	218836803
PRKAG3_chr2_218817308_218836803	0/0	c0005	1470	10	10	0	0	0	0	copy fasta	PRKAG3	chr2	218817308	218836803
PRKAG3_chr2_218817308_218836803	0/0	c0006	1470	8	0	4	0	1	3	copy fasta	PRKAG3	chr2	218817308	218836803
PRKAG3_chr2_218817308_218836803	0/0	c0007	1470	6	6	0	0	0	0	copy fasta	PRKAG3	chr2	218817308	218836803
PRKAG3_chr2_218817308_218836803	0/0	c0008	1470	6	0	0	6	0	0	copy fasta	PRKAG3	chr2	218817308	218836803
PRKAG3_chr2_218817308_218836803	0/0	c0009	1470	3	3	0	0	0	0	copy fasta	PRKAG3	chr2	218817308	218836803
PRKAG3_chr2_218817308_218836803	0/0	c0010	1470	2	1	1	0	0	0	copy fasta	PRKAG3	chr2	218817308	218836803
PRKAG3_chr2_218817308_218836803	0/0	c0011	1470	1	0	0	0	0	1	copy fasta	PRKAG3	chr2	218817308	218836803
PRKAG3_chr2_218817308_218836803	0/0	c0012	1470	1	0	0	1	0	0	copy fasta	PRKAG3	chr2	218817308	218836803
PRKAG3_chr2_218817308_218836803	0/0	c0013	1470	1	0	0	1	0	0	copy fasta	PRKAG3	chr2	218817308	218836803
PRKAG3_chr2_218817308_218836803	0/0	c0014	1470	1	0	0	0	1	0	copy fasta	PRKAG3	chr2	218817308	218836803
PRKAG3_chr2_218817308_218836803	0/0	c0015	1470	1	1	0	0	0	0	copy fasta	PRKAG3	chr2	218817308	218836803
PRKAG3_chr2_218817308_218836803	0/0	c0016	1470	1	1	0	0	0	0	copy fasta	PRKAG3	chr2	218817308	218836803
PRKAG3_chr2_218817308_218836803	0/0	c0017	1470	1	0	0	0	1	0	copy fasta	PRKAG3	chr2	218817308	218836803
PRKAG3_chr2_218817308_218836803	0/0	c0018	1470	1	0	1	0	0	0	copy fasta	PRKAG3	chr2	218817308	218836803
PRKAG3_chr2_218817308_218836803	0/0	c0019	1470	1	0	0	1	0	0	copy fasta	PRKAG3	chr2	218817308	218836803
PRKAR1A_chr17_68507430_68538431	1/1	c0001	1146	402	91	62	191	14	42	copy fasta	PRKAR1A	chr17	68507430	68538431
PRKAR1A_chr17_68507430_68538431	0/0	c0002	1146	3	0	1	0	2	0	copy fasta	PRKAR1A	chr17	68507430	68538431
PRKAR1A_chr17_68507430_68538431	0/0	c0003	1146	2	0	0	2	0	0	copy fasta	PRKAR1A	chr17	68507430	68538431
PRKAR1A_chr17_68507430_68538431	0/0	c0004	1146	2	2	0	0	0	0	copy fasta	PRKAR1A	chr17	68507430	68538431
PRKAR1A_chr17_68507430_68538431	0/0	c0005	1146	1	1	0	0	0	0	copy fasta	PRKAR1A	chr17	68507430	68538431
PRKAR1A_chr17_68507430_68538431	0/0	c0006	1146	1	0	0	1	0	0	copy fasta	PRKAR1A	chr17	68507430	68538431
PRKAR1A_chr17_68507430_68538431	0/0	c0007	1146	1	0	1	0	0	0	copy fasta	PRKAR1A	chr17	68507430	68538431
PRKAR2A_chr3_48741586_48852874	1/1	c0001	1215	163	73	24	38	14	12	copy fasta	PRKAR2A	chr3	48741586	48852874
PRKAR2A_chr3_48741586_48852874	0/0	c0002	1215	1	1	0	0	0	0	copy fasta	PRKAR2A	chr3	48741586	48852874
PRKAR2A_chr3_48741586_48852874	0/0	c0003	1215	1	1	0	0	0	0	copy fasta	PRKAR2A	chr3	48741586	48852874
PRKAR2A_chr3_48741586_48852874	0/0	c0004	1215	1	1	0	0	0	0	copy fasta	PRKAR2A	chr3	48741586	48852874
PRKAR2B_chr7_107039705_107166811	0/0	c0001	1257	112	26	20	44	7	15	copy fasta	PRKAR2B	chr7	107039705	107166811
PRKAR2B_chr7_107039705_107166811	1/1	c0002	1257	60	18	6	27	2	5	copy fasta	PRKAR2B	chr7	107039705	107166811