JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRKAR2B_chr7_107039705_107166811	0/0	c0003	1257	60	3	14	25	5	13	copy fasta	PRKAR2B	chr7	107039705	107166811
PRKAR2B_chr7_107039705_107166811	0/0	c0004	1257	12	5	0	7	0	0	copy fasta	PRKAR2B	chr7	107039705	107166811
PRKAR2B_chr7_107039705_107166811	0/0	c0005	1257	11	11	0	0	0	0	copy fasta	PRKAR2B	chr7	107039705	107166811
PRKAR2B_chr7_107039705_107166811	0/0	c0006	1257	11	0	3	7	0	1	copy fasta	PRKAR2B	chr7	107039705	107166811
PRKAR2B_chr7_107039705_107166811	0/0	c0007	1257	10	8	2	0	0	0	copy fasta	PRKAR2B	chr7	107039705	107166811
PRKAR2B_chr7_107039705_107166811	0/0	c0008	1257	3	3	0	0	0	0	copy fasta	PRKAR2B	chr7	107039705	107166811
PRKAR2B_chr7_107039705_107166811	0/0	c0009	1257	1	1	0	0	0	0	copy fasta	PRKAR2B	chr7	107039705	107166811
PRKAR2B_chr7_107039705_107166811	0/0	c0010	1257	1	1	0	0	0	0	copy fasta	PRKAR2B	chr7	107039705	107166811
PRKAR2B_chr7_107039705_107166811	0/0	c0011	1257	1	0	1	0	0	0	copy fasta	PRKAR2B	chr7	107039705	107166811
PRKCA_chr17_66297613_66815743	0/0	c0001	2019	103	38	16	31	6	12	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	c0002	2019	37	20	5	9	0	3	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/1	c0003	2019	24	5	8	6	2	2	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	c0004	2019	6	4	1	0	0	1	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	c0005	2019	3	1	2	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	c0006	2019	2	2	0	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	c0007	2019	1	1	0	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	1/0	c0008	2019	1	0	0	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	c0009	2019	1	1	0	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCB_chr16_23830983_24225611	1/1	c0001	2022	46	15	10	10	0	9	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	c0002	2022	26	13	3	4	0	6	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	c0003	2022	24	10	10	3	0	1	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	c0004	2022	13	9	3	0	0	1	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	c0005	2022	11	6	3	1	1	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	c0006	2022	5	4	1	0	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	c0007	2022	4	2	0	0	0	2	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	c0008	2022	4	0	0	3	0	1	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	c0009	2022	3	1	2	0	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	c0010	2022	3	2	0	0	1	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	c0011	2022	2	0	1	0	0	1	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	c0012	2022	1	1	0	0	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	c0013	2022	1	1	0	0	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	c0014	2022	1	0	1	0	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	c0015	2022	1	0	0	0	0	1	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	c0016	2022	1	0	0	1	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	c0017	2022	1	1	0	0	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	c0018	2022	1	1	0	0	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCD_chr3_53156209_53197717	0/0	c0001	2031	155	24	29	73	9	20	copy fasta	PRKCD	chr3	53156209	53197717
PRKCD_chr3_53156209_53197717	0/1	c0002	2031	66	5	25	20	3	12	copy fasta	PRKCD	chr3	53156209	53197717
PRKCD_chr3_53156209_53197717	0/0	c0003	2031	28	24	3	1	0	0	copy fasta	PRKCD	chr3	53156209	53197717
PRKCD_chr3_53156209_53197717	0/0	c0004	2031	16	1	5	1	4	5	copy fasta	PRKCD	chr3	53156209	53197717
PRKCD_chr3_53156209_53197717	1/0	c0005	2031	15	13	1	0	0	0	copy fasta	PRKCD	chr3	53156209	53197717
PRKCD_chr3_53156209_53197717	0/0	c0006	2031	11	1	0	3	0	7	copy fasta	PRKCD	chr3	53156209	53197717
PRKCD_chr3_53156209_53197717	0/0	c0007	2031	9	9	0	0	0	0	copy fasta	PRKCD	chr3	53156209	53197717
PRKCD_chr3_53156209_53197717	0/0	c0008	2031	6	5	1	0	0	0	copy fasta	PRKCD	chr3	53156209	53197717
PRKCD_chr3_53156209_53197717	0/0	c0009	2031	2	1	0	1	0	0	copy fasta	PRKCD	chr3	53156209	53197717
PRKCD_chr3_53156209_53197717	0/0	c0010	2031	2	0	2	0	0	0	copy fasta	PRKCD	chr3	53156209	53197717
PRKCD_chr3_53156209_53197717	0/0	c0011	2031	2	2	0	0	0	0	copy fasta	PRKCD	chr3	53156209	53197717
PRKCD_chr3_53156209_53197717	0/0	c0012	2031	2	0	0	0	0	2	copy fasta	PRKCD	chr3	53156209	53197717
PRKCD_chr3_53156209_53197717	0/0	c0013	2031	2	2	0	0	0	0	copy fasta	PRKCD	chr3	53156209	53197717
PRKCD_chr3_53156209_53197717	0/0	c0014	2031	1	1	0	0	0	0	copy fasta	PRKCD	chr3	53156209	53197717