JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRKCD_chr3_53156209_53197717	0/0	c0015	2031	1	0	1	0	0	0	copy fasta	PRKCD	chr3	53156209	53197717
PRKCD_chr3_53156209_53197717	0/0	c0016	2031	1	1	0	0	0	0	copy fasta	PRKCD	chr3	53156209	53197717
PRKCD_chr3_53156209_53197717	0/0	c0017	2031	1	1	0	0	0	0	copy fasta	PRKCD	chr3	53156209	53197717
PRKCD_chr3_53156209_53197717	0/0	c0018	2031	1	0	0	1	0	0	copy fasta	PRKCD	chr3	53156209	53197717
PRKCD_chr3_53156209_53197717	0/0	c0019	2031	1	0	1	0	0	0	copy fasta	PRKCD	chr3	53156209	53197717
PRKCE_chr2_45646675_46192990	1/1	c0001	2214	129	57	29	20	8	13	copy fasta	PRKCE	chr2	45646675	46192990
PRKCE_chr2_45646675_46192990	0/0	c0002	2214	24	1	5	9	1	8	copy fasta	PRKCE	chr2	45646675	46192990
PRKCE_chr2_45646675_46192990	0/0	c0003	2214	4	0	2	1	1	0	copy fasta	PRKCE	chr2	45646675	46192990
PRKCE_chr2_45646675_46192990	0/0	c0004	2214	3	3	0	0	0	0	copy fasta	PRKCE	chr2	45646675	46192990
PRKCE_chr2_45646675_46192990	0/0	c0005	2214	2	2	0	0	0	0	copy fasta	PRKCE	chr2	45646675	46192990
PRKCE_chr2_45646675_46192990	0/0	c0006	2214	1	1	0	0	0	0	copy fasta	PRKCE	chr2	45646675	46192990
PRKCE_chr2_45646675_46192990	0/0	c0007	2214	1	1	0	0	0	0	copy fasta	PRKCE	chr2	45646675	46192990
PRKCE_chr2_45646675_46192990	0/0	c0008	2214	1	0	0	1	0	0	copy fasta	PRKCE	chr2	45646675	46192990
PRKCE_chr2_45646675_46192990	0/0	c0009	2214	1	1	0	0	0	0	copy fasta	PRKCE	chr2	45646675	46192990
PRKCE_chr2_45646675_46192990	0/0	c0010	2214	1	0	0	0	0	1	copy fasta	PRKCE	chr2	45646675	46192990
PRKCE_chr2_45646675_46192990	0/0	c0011	2214	1	0	0	1	0	0	copy fasta	PRKCE	chr2	45646675	46192990
PRKCG_chr19_53877197_53912652	0/0	c0001	2094	147	33	28	54	5	27	copy fasta	PRKCG	chr19	53877197	53912652
PRKCG_chr19_53877197_53912652	0/0	c0002	2094	111	19	31	38	9	14	copy fasta	PRKCG	chr19	53877197	53912652
PRKCG_chr19_53877197_53912652	0/0	c0003	2094	33	2	1	30	0	0	copy fasta	PRKCG	chr19	53877197	53912652
PRKCG_chr19_53877197_53912652	0/0	c0004	2094	16	12	4	0	0	0	copy fasta	PRKCG	chr19	53877197	53912652
PRKCG_chr19_53877197_53912652	1/1	c0005	2094	10	5	2	0	0	1	copy fasta	PRKCG	chr19	53877197	53912652
PRKCG_chr19_53877197_53912652	0/0	c0006	2094	7	6	1	0	0	0	copy fasta	PRKCG	chr19	53877197	53912652
PRKCG_chr19_53877197_53912652	0/0	c0007	2094	7	6	0	0	0	1	copy fasta	PRKCG	chr19	53877197	53912652
PRKCG_chr19_53877197_53912652	0/0	c0008	2094	4	0	0	4	0	0	copy fasta	PRKCG	chr19	53877197	53912652
PRKCG_chr19_53877197_53912652	0/0	c0009	2094	3	0	0	3	0	0	copy fasta	PRKCG	chr19	53877197	53912652
PRKCG_chr19_53877197_53912652	0/0	c0010	2094	3	3	0	0	0	0	copy fasta	PRKCG	chr19	53877197	53912652
PRKCG_chr19_53877197_53912652	0/0	c0011	2094	3	0	0	0	0	3	copy fasta	PRKCG	chr19	53877197	53912652
PRKCG_chr19_53877197_53912652	0/0	c0012	2094	2	2	0	0	0	0	copy fasta	PRKCG	chr19	53877197	53912652
PRKCG_chr19_53877197_53912652	0/0	c0013	2094	2	2	0	0	0	0	copy fasta	PRKCG	chr19	53877197	53912652
PRKCG_chr19_53877197_53912652	0/0	c0014	2094	2	0	0	2	0	0	copy fasta	PRKCG	chr19	53877197	53912652
PRKCG_chr19_53877197_53912652	0/0	c0015	2094	1	0	0	1	0	0	copy fasta	PRKCG	chr19	53877197	53912652
PRKCG_chr19_53877197_53912652	0/0	c0016	2094	1	1	0	0	0	0	copy fasta	PRKCG	chr19	53877197	53912652
PRKCG_chr19_53877197_53912652	0/0	c0017	2094	1	0	1	0	0	0	copy fasta	PRKCG	chr19	53877197	53912652
PRKCG_chr19_53877197_53912652	0/0	c0018	2094	1	0	1	0	0	0	copy fasta	PRKCG	chr19	53877197	53912652
PRKCG_chr19_53877197_53912652	0/0	c0019	2094	1	0	0	1	0	0	copy fasta	PRKCG	chr19	53877197	53912652
PRKCG_chr19_53877197_53912652	0/0	c0020	2094	1	0	1	0	0	0	copy fasta	PRKCG	chr19	53877197	53912652
PRKCG_chr19_53877197_53912652	0/0	c0021	2094	1	1	0	0	0	0	copy fasta	PRKCG	chr19	53877197	53912652
PRKCG_chr19_53877197_53912652	0/0	c0022	2094	1	0	0	1	0	0	copy fasta	PRKCG	chr19	53877197	53912652
PRKCG_chr19_53877197_53912652	0/0	c0023	2094	1	0	0	1	0	0	copy fasta	PRKCG	chr19	53877197	53912652
PRKCG_chr19_53877197_53912652	0/0	c0024	2094	1	0	0	1	0	0	copy fasta	PRKCG	chr19	53877197	53912652
PRKCG_chr19_53877197_53912652	0/0	c0025	2094	1	1	0	0	0	0	copy fasta	PRKCG	chr19	53877197	53912652
PRKCG_chr19_53877197_53912652	0/0	c0026	2094	1	1	0	0	0	0	copy fasta	PRKCG	chr19	53877197	53912652
PRKCH_chr14_61316579_61555976	0/1	c0001	2052	94	19	25	31	5	13	copy fasta	PRKCH	chr14	61316579	61555976
PRKCH_chr14_61316579_61555976	1/0	c0002	2052	35	19	5	4	0	6	copy fasta	PRKCH	chr14	61316579	61555976
PRKCH_chr14_61316579_61555976	0/0	c0003	2052	24	14	4	3	1	2	copy fasta	PRKCH	chr14	61316579	61555976
PRKCH_chr14_61316579_61555976	0/0	c0004	2052	22	12	2	7	0	1	copy fasta	PRKCH	chr14	61316579	61555976
PRKCH_chr14_61316579_61555976	0/0	c0005	2052	8	0	0	8	0	0	copy fasta	PRKCH	chr14	61316579	61555976
PRKCH_chr14_61316579_61555976	0/0	c0006	2052	8	0	1	7	0	0	copy fasta	PRKCH	chr14	61316579	61555976
PRKCH_chr14_61316579_61555976	0/0	c0007	2052	3	2	1	0	0	0	copy fasta	PRKCH	chr14	61316579	61555976
PRKCH_chr14_61316579_61555976	0/0	c0008	2052	3	3	0	0	0	0	copy fasta	PRKCH	chr14	61316579	61555976