JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRKCH_chr14_61316579_61555976	0/0	c0009	2052	2	2	0	0	0	0	copy fasta	PRKCH	chr14	61316579	61555976
PRKCH_chr14_61316579_61555976	0/0	c0010	2052	2	0	0	2	0	0	copy fasta	PRKCH	chr14	61316579	61555976
PRKCH_chr14_61316579_61555976	0/0	c0011	2052	2	2	0	0	0	0	copy fasta	PRKCH	chr14	61316579	61555976
PRKCH_chr14_61316579_61555976	0/0	c0012	2052	1	0	0	1	0	0	copy fasta	PRKCH	chr14	61316579	61555976
PRKCH_chr14_61316579_61555976	0/0	c0013	2052	1	1	0	0	0	0	copy fasta	PRKCH	chr14	61316579	61555976
PRKCH_chr14_61316579_61555976	0/0	c0014	2052	1	0	0	1	0	0	copy fasta	PRKCH	chr14	61316579	61555976
PRKCH_chr14_61316579_61555976	0/0	c0015	2052	1	0	0	1	0	0	copy fasta	PRKCH	chr14	61316579	61555976
PRKCH_chr14_61316579_61555976	0/0	c0016	2052	1	0	0	1	0	0	copy fasta	PRKCH	chr14	61316579	61555976
PRKCI_chr3_170217424_170310977	1/0	c0001	1791	303	88	56	114	13	31	copy fasta	PRKCI	chr3	170217424	170310977
PRKCI_chr3_170217424_170310977	0/0	c0002	1791	18	0	0	17	0	1	copy fasta	PRKCI	chr3	170217424	170310977
PRKCI_chr3_170217424_170310977	0/1	c0003	1791	17	3	10	3	0	0	copy fasta	PRKCI	chr3	170217424	170310977
PRKCI_chr3_170217424_170310977	0/0	c0004	1791	1	0	0	0	1	0	copy fasta	PRKCI	chr3	170217424	170310977
PRKCI_chr3_170217424_170310977	0/0	c0005	1791	1	0	0	1	0	0	copy fasta	PRKCI	chr3	170217424	170310977
PRKCI_chr3_170217424_170310977	0/0	c0006	1791	1	0	0	1	0	0	copy fasta	PRKCI	chr3	170217424	170310977
PRKCI_chr3_170217424_170310977	0/0	c0007	1791	1	1	0	0	0	0	copy fasta	PRKCI	chr3	170217424	170310977
PRKCQ_chr10_6422148_6585276	0/0	c0001	2121	133	25	33	57	5	13	copy fasta	PRKCQ	chr10	6422148	6585276
PRKCQ_chr10_6422148_6585276	0/0	c0002	2121	67	22	10	24	0	11	copy fasta	PRKCQ	chr10	6422148	6585276
PRKCQ_chr10_6422148_6585276	0/0	c0003	2121	17	5	3	2	3	4	copy fasta	PRKCQ	chr10	6422148	6585276
PRKCQ_chr10_6422148_6585276	0/0	c0004	2121	10	8	0	2	0	0	copy fasta	PRKCQ	chr10	6422148	6585276
PRKCQ_chr10_6422148_6585276	0/0	c0005	2121	4	3	0	1	0	0	copy fasta	PRKCQ	chr10	6422148	6585276
PRKCQ_chr10_6422148_6585276	0/0	c0006	2121	3	3	0	0	0	0	copy fasta	PRKCQ	chr10	6422148	6585276
PRKCQ_chr10_6422148_6585276	0/0	c0007	2121	3	3	0	0	0	0	copy fasta	PRKCQ	chr10	6422148	6585276
PRKCQ_chr10_6422148_6585276	0/0	c0008	2121	2	1	1	0	0	0	copy fasta	PRKCQ	chr10	6422148	6585276
PRKCQ_chr10_6422148_6585276	0/0	c0009	2121	2	0	2	0	0	0	copy fasta	PRKCQ	chr10	6422148	6585276
PRKCQ_chr10_6422148_6585276	0/0	c0010	2121	2	0	0	0	1	1	copy fasta	PRKCQ	chr10	6422148	6585276
PRKCQ_chr10_6422148_6585276	0/0	c0011	2121	1	1	0	0	0	0	copy fasta	PRKCQ	chr10	6422148	6585276
PRKCQ_chr10_6422148_6585276	0/0	c0012	2121	1	0	0	0	0	1	copy fasta	PRKCQ	chr10	6422148	6585276
PRKCQ_chr10_6422148_6585276	0/0	c0013	2121	1	1	0	0	0	0	copy fasta	PRKCQ	chr10	6422148	6585276
PRKCQ_chr10_6422148_6585276	0/0	c0014	2121	1	0	0	1	0	0	copy fasta	PRKCQ	chr10	6422148	6585276
PRKCQ_chr10_6422148_6585276	0/0	c0015	2121	1	1	0	0	0	0	copy fasta	PRKCQ	chr10	6422148	6585276
PRKCQ_chr10_6422148_6585276	0/0	c0016	2121	1	1	0	0	0	0	copy fasta	PRKCQ	chr10	6422148	6585276
PRKCQ_chr10_6422148_6585276	0/0	c0017	2121	1	0	0	1	0	0	copy fasta	PRKCQ	chr10	6422148	6585276
PRKCQ_chr10_6422148_6585276	0/0	c0018	2121	1	0	0	0	1	0	copy fasta	PRKCQ	chr10	6422148	6585276
PRKCQ_chr10_6422148_6585276	0/0	c0019	2121	1	0	1	0	0	0	copy fasta	PRKCQ	chr10	6422148	6585276
PRKCSH_chr19_11430635_11455968	1/0	c0001	1608	174	38	29	83	5	18	copy fasta	PRKCSH	chr19	11430635	11455968
PRKCSH_chr19_11430635_11455968	0/1	c0002	1605	130	46	21	46	6	10	copy fasta	PRKCSH	chr19	11430635	11455968
PRKCSH_chr19_11430635_11455968	0/0	c0003	1605	19	1	9	2	4	3	copy fasta	PRKCSH	chr19	11430635	11455968
PRKCSH_chr19_11430635_11455968	0/0	c0004	1611	9	7	1	0	0	1	copy fasta	PRKCSH	chr19	11430635	11455968
PRKCSH_chr19_11430635_11455968	0/0	c0005	1602	7	1	5	0	1	0	copy fasta	PRKCSH	chr19	11430635	11455968
PRKCSH_chr19_11430635_11455968	0/0	c0006	1608	3	0	0	1	0	2	copy fasta	PRKCSH	chr19	11430635	11455968
PRKCSH_chr19_11430635_11455968	0/0	c0007	1608	2	2	0	0	0	0	copy fasta	PRKCSH	chr19	11430635	11455968
PRKCSH_chr19_11430635_11455968	0/0	c0008	1611	1	1	0	0	0	0	copy fasta	PRKCSH	chr19	11430635	11455968
PRKCSH_chr19_11430635_11455968	0/0	c0009	1608	1	0	1	0	0	0	copy fasta	PRKCSH	chr19	11430635	11455968
PRKCZ_chr1_2045411_2190395	0/0	c0001	1779	122	61	13	40	0	8	copy fasta	PRKCZ	chr1	2045411	2190395
PRKCZ_chr1_2045411_2190395	0/0	c0002	1779	74	6	11	40	1	16	copy fasta	PRKCZ	chr1	2045411	2190395
PRKCZ_chr1_2045411_2190395	1/1	c0003	1779	73	13	28	10	9	11	copy fasta	PRKCZ	chr1	2045411	2190395
PRKCZ_chr1_2045411_2190395	0/0	c0004	1779	13	0	0	13	0	0	copy fasta	PRKCZ	chr1	2045411	2190395
PRKCZ_chr1_2045411_2190395	0/0	c0005	1779	1	0	1	0	0	0	copy fasta	PRKCZ	chr1	2045411	2190395
PRKCZ_chr1_2045411_2190395	0/0	c0006	1779	1	0	1	0	0	0	copy fasta	PRKCZ	chr1	2045411	2190395
PRKCZ_chr1_2045411_2190395	0/0	c0007	1779	1	0	0	1	0	0	copy fasta	PRKCZ	chr1	2045411	2190395