JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ARSG_chr17_68286495_68425814	0/0	c0004	1578	27	1	0	21	0	5	copy fasta	ARSG	chr17	68286495	68425814
ARSG_chr17_68286495_68425814	0/0	c0005	1578	17	1	4	11	1	0	copy fasta	ARSG	chr17	68286495	68425814
ARSG_chr17_68286495_68425814	0/0	c0006	1578	16	8	2	5	1	0	copy fasta	ARSG	chr17	68286495	68425814
ARSG_chr17_68286495_68425814	0/0	c0007	1578	13	2	3	5	2	1	copy fasta	ARSG	chr17	68286495	68425814
ARSG_chr17_68286495_68425814	0/0	c0008	1578	10	0	0	6	0	4	copy fasta	ARSG	chr17	68286495	68425814
ARSG_chr17_68286495_68425814	0/0	c0009	1578	9	7	1	1	0	0	copy fasta	ARSG	chr17	68286495	68425814
ARSG_chr17_68286495_68425814	0/0	c0010	1578	4	2	0	2	0	0	copy fasta	ARSG	chr17	68286495	68425814
ARSG_chr17_68286495_68425814	0/0	c0011	1578	3	0	0	3	0	0	copy fasta	ARSG	chr17	68286495	68425814
ARSG_chr17_68286495_68425814	0/0	c0012	1578	3	2	0	0	0	1	copy fasta	ARSG	chr17	68286495	68425814
ARSG_chr17_68286495_68425814	0/0	c0013	1578	3	3	0	0	0	0	copy fasta	ARSG	chr17	68286495	68425814
ARSG_chr17_68286495_68425814	0/0	c0014	1578	2	0	0	2	0	0	copy fasta	ARSG	chr17	68286495	68425814
ARSG_chr17_68286495_68425814	0/0	c0015	1578	2	0	2	0	0	0	copy fasta	ARSG	chr17	68286495	68425814
ARSG_chr17_68286495_68425814	0/0	c0016	1578	2	0	0	2	0	0	copy fasta	ARSG	chr17	68286495	68425814
ARSG_chr17_68286495_68425814	0/0	c0017	1578	2	2	0	0	0	0	copy fasta	ARSG	chr17	68286495	68425814
ARSG_chr17_68286495_68425814	0/0	c0018	1578	1	0	0	1	0	0	copy fasta	ARSG	chr17	68286495	68425814
ARSG_chr17_68286495_68425814	0/0	c0019	1578	1	0	1	0	0	0	copy fasta	ARSG	chr17	68286495	68425814
ARSG_chr17_68286495_68425814	0/0	c0020	1578	1	1	0	0	0	0	copy fasta	ARSG	chr17	68286495	68425814
ARSG_chr17_68286495_68425814	0/0	c0021	1578	1	1	0	0	0	0	copy fasta	ARSG	chr17	68286495	68425814
ARSG_chr17_68286495_68425814	0/0	c0022	1578	1	1	0	0	0	0	copy fasta	ARSG	chr17	68286495	68425814
ARSG_chr17_68286495_68425814	0/0	c0023	1578	1	0	0	1	0	0	copy fasta	ARSG	chr17	68286495	68425814
ARSG_chr17_68286495_68425814	0/0	c0024	1578	1	1	0	0	0	0	copy fasta	ARSG	chr17	68286495	68425814
ARSG_chr17_68286495_68425814	0/0	c0025	1578	1	1	0	0	0	0	copy fasta	ARSG	chr17	68286495	68425814
ARSG_chr17_68286495_68425814	0/0	c0026	1578	1	0	0	1	0	0	copy fasta	ARSG	chr17	68286495	68425814
ARSG_chr17_68286495_68425814	0/0	c0027	1578	1	1	0	0	0	0	copy fasta	ARSG	chr17	68286495	68425814
ARSG_chr17_68286495_68425814	0/0	c0028	1578	1	1	0	0	0	0	copy fasta	ARSG	chr17	68286495	68425814
ARSG_chr17_68286495_68425814	0/0	c0029	1578	1	1	0	0	0	0	copy fasta	ARSG	chr17	68286495	68425814
ARSG_chr17_68286495_68425814	0/0	c0030	1578	1	1	0	0	0	0	copy fasta	ARSG	chr17	68286495	68425814
ARSG_chr17_68286495_68425814	0/0	c0031	1578	1	1	0	0	0	0	copy fasta	ARSG	chr17	68286495	68425814
ARSG_chr17_68286495_68425814	0/0	c0032	1578	1	1	0	0	0	0	copy fasta	ARSG	chr17	68286495	68425814
ARSH_chrX_3001546_3039111	0/0	c0001	1689	194	26	41	96	7	24	copy fasta	ARSH	chrX	3001546	3039111
ARSH_chrX_3001546_3039111	1/1	c0002	1689	25	14	3	0	4	2	copy fasta	ARSH	chrX	3001546	3039111
ARSH_chrX_3001546_3039111	0/0	c0003	1689	4	0	0	4	0	0	copy fasta	ARSH	chrX	3001546	3039111
ARSH_chrX_3001546_3039111	0/0	c0004	1689	4	0	1	0	1	2	copy fasta	ARSH	chrX	3001546	3039111
ARSH_chrX_3001546_3039111	0/0	c0005	1689	3	2	1	0	0	0	copy fasta	ARSH	chrX	3001546	3039111
ARSH_chrX_3001546_3039111	0/0	c0006	1689	3	0	3	0	0	0	copy fasta	ARSH	chrX	3001546	3039111
ARSH_chrX_3001546_3039111	0/0	c0007	1689	3	3	0	0	0	0	copy fasta	ARSH	chrX	3001546	3039111
ARSH_chrX_3001546_3039111	0/0	c0008	1689	2	0	2	0	0	0	copy fasta	ARSH	chrX	3001546	3039111
ARSH_chrX_3001546_3039111	0/0	c0009	1689	1	1	0	0	0	0	copy fasta	ARSH	chrX	3001546	3039111
ARSH_chrX_3001546_3039111	0/0	c0010	1689	1	1	0	0	0	0	copy fasta	ARSH	chrX	3001546	3039111
ARSH_chrX_3001546_3039111	0/0	c0011	1690	1	0	0	1	0	0	copy fasta	ARSH	chrX	3001546	3039111
ARSH_chrX_3001546_3039111	0/0	c0012	1689	1	0	0	0	0	1	copy fasta	ARSH	chrX	3001546	3039111
ARSH_chrX_3001546_3039111	0/0	c0013	1690	1	0	0	1	0	0	copy fasta	ARSH	chrX	3001546	3039111
ARSH_chrX_3001546_3039111	0/0	c0014	1689	1	0	0	0	0	1	copy fasta	ARSH	chrX	3001546	3039111
ARSH_chrX_3001546_3039111	0/0	c0015	1689	1	0	1	0	0	0	copy fasta	ARSH	chrX	3001546	3039111
ARSH_chrX_3001546_3039111	0/0	c0016	1689	1	0	0	1	0	0	copy fasta	ARSH	chrX	3001546	3039111
ARSH_chrX_3001546_3039111	0/0	c0017	1689	1	0	0	0	1	0	copy fasta	ARSH	chrX	3001546	3039111
ARSH_chrX_3001546_3039111	0/0	c0018	1689	1	0	0	0	0	1	copy fasta	ARSH	chrX	3001546	3039111
ARSI_chr5_150291343_150307905	0/1	c0001	1710	410	82	71	198	13	45	copy fasta	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	c0002	1710	10	8	2	0	0	0	copy fasta	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	c0003	1710	9	0	0	9	0	0	copy fasta	ARSI	chr5	150291343	150307905