JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRKDC_chr8_47768111_47965136	1/1	c0001	12387	79	14	15	28	2	18	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	c0002	12387	49	15	12	16	1	5	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	c0003	12387	8	8	0	0	0	0	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	c0004	12387	4	4	0	0	0	0	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	c0005	12387	4	0	2	0	1	1	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	c0006	12387	4	4	0	0	0	0	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	c0007	12387	4	3	1	0	0	0	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	c0008	12387	4	4	0	0	0	0	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	c0009	12387	3	2	0	0	0	1	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	c0010	12387	3	3	0	0	0	0	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	c0011	12387	2	2	0	0	0	0	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	c0012	12387	2	0	0	2	0	0	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	c0013	12387	2	0	2	0	0	0	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	c0014	12387	2	2	0	0	0	0	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	c0015	12387	1	0	0	0	0	1	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	c0016	12387	1	1	0	0	0	0	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	c0017	12387	1	0	0	0	0	1	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	c0018	12387	1	1	0	0	0	0	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	c0019	12387	1	0	0	0	0	1	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	c0020	12387	1	1	0	0	0	0	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	c0021	12387	1	1	0	0	0	0	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	c0022	12387	1	0	0	1	0	0	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	c0023	12387	1	0	0	0	0	1	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	c0024	12387	1	0	0	0	0	1	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	c0025	12387	1	0	1	0	0	0	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	c0026	12387	1	0	0	1	0	0	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	c0027	12387	1	1	0	0	0	0	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	c0028	12387	1	0	0	1	0	0	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	c0029	12387	1	0	1	0	0	0	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	c0030	12387	1	0	0	1	0	0	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	c0031	12387	1	1	0	0	0	0	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	c0032	12387	1	0	0	1	0	0	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	c0033	12387	1	1	0	0	0	0	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	c0034	12387	1	0	0	1	0	0	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	c0035	12387	1	1	0	0	0	0	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	c0036	12387	1	1	0	0	0	0	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	c0037	12387	1	1	0	0	0	0	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	c0038	12387	1	1	0	0	0	0	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	c0039	12387	1	1	0	0	0	0	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	c0040	12387	1	1	0	0	0	0	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	c0041	12387	1	1	0	0	0	0	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	c0042	12387	1	1	0	0	0	0	copy fasta	PRKDC	chr8	47768111	47965136
PRKG1_chr10_51069487_52303350	0/0	c0001	2061	46	30	12	0	1	3	copy fasta	PRKG1	chr10	51069487	52303350
PRKG1_chr10_51069487_52303350	0/0	c0002	2061	9	7	2	0	0	0	copy fasta	PRKG1	chr10	51069487	52303350
PRKG1_chr10_51069487_52303350	0/0	c0003	2061	2	2	0	0	0	0	copy fasta	PRKG1	chr10	51069487	52303350
PRKG1_chr10_51069487_52303350	0/0	c0004	2061	2	0	1	0	1	0	copy fasta	PRKG1	chr10	51069487	52303350
PRKG1_chr10_51069487_52303350	0/0	c0005	2061	1	0	0	0	0	1	copy fasta	PRKG1	chr10	51069487	52303350
PRKG1_chr10_51069487_52303350	0/0	c0006	2061	1	1	0	0	0	0	copy fasta	PRKG1	chr10	51069487	52303350
PRKG1_chr10_51069487_52303350	0/0	c0007	2061	1	1	0	0	0	0	copy fasta	PRKG1	chr10	51069487	52303350
PRKG1_chr10_51069487_52303350	0/0	c0008	2061	1	1	0	0	0	0	copy fasta	PRKG1	chr10	51069487	52303350