JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRKG1_chr10_51069487_52303350	0/0	c0009	2061	1	0	1	0	0	0	copy fasta	PRKG1	chr10	51069487	52303350
PRKG2_chr4_81082375_81220222	1/1	c0001	2289	221	83	46	74	1	15	copy fasta	PRKG2	chr4	81082375	81220222
PRKG2_chr4_81082375_81220222	0/0	c0002	2289	27	7	7	6	1	6	copy fasta	PRKG2	chr4	81082375	81220222
PRKG2_chr4_81082375_81220222	0/0	c0003	2289	1	0	1	0	0	0	copy fasta	PRKG2	chr4	81082375	81220222
PRKG2_chr4_81082375_81220222	0/0	c0004	2289	1	0	0	0	0	1	copy fasta	PRKG2	chr4	81082375	81220222
PRKN_chr6_161342417_162732766	0/0	c0001	1398	16	10	3	0	0	3	copy fasta	PRKN	chr6	161342417	162732766
PRKN_chr6_161342417_162732766	0/0	c0002	1398	3	1	1	0	0	1	copy fasta	PRKN	chr6	161342417	162732766
PRKN_chr6_161342417_162732766	0/0	c0003	1398	3	3	0	0	0	0	copy fasta	PRKN	chr6	161342417	162732766
PRKN_chr6_161342417_162732766	0/0	c0004	1398	2	2	0	0	0	0	copy fasta	PRKN	chr6	161342417	162732766
PRKN_chr6_161342417_162732766	0/0	c0005	1398	2	1	0	0	0	1	copy fasta	PRKN	chr6	161342417	162732766
PRKN_chr6_161342417_162732766	0/0	c0006	1398	1	1	0	0	0	0	copy fasta	PRKN	chr6	161342417	162732766
PRKN_chr6_161342417_162732766	0/0	c0007	1398	1	1	0	0	0	0	copy fasta	PRKN	chr6	161342417	162732766
PRKN_chr6_161342417_162732766	0/0	c0008	1398	1	1	0	0	0	0	copy fasta	PRKN	chr6	161342417	162732766
PRKN_chr6_161342417_162732766	0/0	c0009	1398	1	1	0	0	0	0	copy fasta	PRKN	chr6	161342417	162732766
PRKN_chr6_161342417_162732766	0/0	c0010	1398	1	1	0	0	0	0	copy fasta	PRKN	chr6	161342417	162732766
PRKN_chr6_161342417_162732766	0/0	c0011	1398	1	0	0	0	0	1	copy fasta	PRKN	chr6	161342417	162732766
PRKRA_chr2_178426414_178456175	1/1	c0001	942	403	86	73	188	12	42	copy fasta	PRKRA	chr2	178426414	178456175
PRKRA_chr2_178426414_178456175	0/0	c0002	942	2	0	0	0	2	0	copy fasta	PRKRA	chr2	178426414	178456175
PRKRA_chr2_178426414_178456175	0/0	c0003	942	1	0	1	0	0	0	copy fasta	PRKRA	chr2	178426414	178456175
PRKRIP1_chr7_102391363_102431666	1/0	c0001	555	351	72	67	151	14	46	copy fasta	PRKRIP1	chr7	102391363	102431666
PRKRIP1_chr7_102391363_102431666	0/1	c0002	555	25	13	7	0	2	2	copy fasta	PRKRIP1	chr7	102391363	102431666
PRKRIP1_chr7_102391363_102431666	0/0	c0003	555	3	3	0	0	0	0	copy fasta	PRKRIP1	chr7	102391363	102431666
PRKRIP1_chr7_102391363_102431666	0/0	c0004	555	1	0	0	1	0	0	copy fasta	PRKRIP1	chr7	102391363	102431666
PRKRIP1_chr7_102391363_102431666	0/0	c0005	555	1	0	0	1	0	0	copy fasta	PRKRIP1	chr7	102391363	102431666
PRKRIP1_chr7_102391363_102431666	0/0	c0006	555	1	0	0	1	0	0	copy fasta	PRKRIP1	chr7	102391363	102431666
PRKX_chrX_3599340_3718649	0/1	c0001	1077	118	43	9	56	1	8	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	c0002	1077	61	21	17	17	1	5	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	1/0	c0003	1077	19	0	7	5	2	4	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	c0004	1077	17	1	8	0	1	7	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	c0005	1077	3	0	0	3	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	c0006	1076	1	0	0	1	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	c0007	1077	1	1	0	0	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	c0008	1077	1	1	0	0	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	c0009	1077	1	0	0	1	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	c0010	1077	1	1	0	0	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	c0011	1077	1	0	0	1	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	c0012	1077	1	0	1	0	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	c0013	1078	1	0	0	0	1	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	c0014	1077	1	0	0	0	0	1	copy fasta	PRKX	chrX	3599340	3718649
PRLHR_chr10_118584997_118600648	0/1	c0001	1113	402	69	75	206	11	40	copy fasta	PRLHR	chr10	118584997	118600648
PRLHR_chr10_118584997_118600648	1/0	c0002	1113	8	7	0	0	0	0	copy fasta	PRLHR	chr10	118584997	118600648
PRLHR_chr10_118584997_118600648	0/0	c0003	1113	7	7	0	0	0	0	copy fasta	PRLHR	chr10	118584997	118600648
PRLHR_chr10_118584997_118600648	0/0	c0004	1113	7	0	6	0	1	0	copy fasta	PRLHR	chr10	118584997	118600648
PRLHR_chr10_118584997_118600648	0/0	c0005	1113	6	5	1	0	0	0	copy fasta	PRLHR	chr10	118584997	118600648
PRLHR_chr10_118584997_118600648	0/0	c0006	1113	3	0	0	0	0	3	copy fasta	PRLHR	chr10	118584997	118600648
PRLHR_chr10_118584997_118600648	0/0	c0007	1113	3	0	0	0	0	3	copy fasta	PRLHR	chr10	118584997	118600648
PRLHR_chr10_118584997_118600648	0/0	c0008	1113	2	0	0	0	0	2	copy fasta	PRLHR	chr10	118584997	118600648
PRLHR_chr10_118584997_118600648	0/0	c0009	1113	2	2	0	0	0	0	copy fasta	PRLHR	chr10	118584997	118600648
PRLHR_chr10_118584997_118600648	0/0	c0010	1113	1	1	0	0	0	0	copy fasta	PRLHR	chr10	118584997	118600648
PRLHR_chr10_118584997_118600648	0/0	c0011	1113	1	0	0	0	0	1	copy fasta	PRLHR	chr10	118584997	118600648