JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRLHR_chr10_118584997_118600648	0/0	c0012	1113	1	1	0	0	0	0	copy fasta	PRLHR	chr10	118584997	118600648
PRLHR_chr10_118584997_118600648	0/0	c0013	1113	1	0	0	0	0	1	copy fasta	PRLHR	chr10	118584997	118600648
PRLH_chr2_237561574_237572175	1/1	c0001	264	401	93	73	174	12	47	copy fasta	PRLH	chr2	237561574	237572175
PRLH_chr2_237561574_237572175	0/0	c0002	264	1	1	0	0	0	0	copy fasta	PRLH	chr2	237561574	237572175
PRLH_chr2_237561574_237572175	0/0	c0003	264	1	0	0	0	0	1	copy fasta	PRLH	chr2	237561574	237572175
PRLH_chr2_237561574_237572175	0/0	c0004	264	1	0	1	0	0	0	copy fasta	PRLH	chr2	237561574	237572175
PRLR_chr5_35050702_35235487	1/1	c0001	1869	188	74	34	59	2	17	copy fasta	PRLR	chr5	35050702	35235487
PRLR_chr5_35050702_35235487	0/0	c0002	1869	22	9	5	3	0	5	copy fasta	PRLR	chr5	35050702	35235487
PRLR_chr5_35050702_35235487	0/0	c0003	1869	2	2	0	0	0	0	copy fasta	PRLR	chr5	35050702	35235487
PRLR_chr5_35050702_35235487	0/0	c0004	1869	1	0	1	0	0	0	copy fasta	PRLR	chr5	35050702	35235487
PRLR_chr5_35050702_35235487	0/0	c0005	1869	1	1	0	0	0	0	copy fasta	PRLR	chr5	35050702	35235487
PRL_chr6_22282246_22302036	1/1	c0001	684	365	79	67	156	14	47	copy fasta	PRL	chr6	22282246	22302036
PRL_chr6_22282246_22302036	0/0	c0002	684	66	4	9	50	0	3	copy fasta	PRL	chr6	22282246	22302036
PRL_chr6_22282246_22302036	0/0	c0003	684	5	5	0	0	0	0	copy fasta	PRL	chr6	22282246	22302036
PRL_chr6_22282246_22302036	0/0	c0004	684	3	3	0	0	0	0	copy fasta	PRL	chr6	22282246	22302036
PRL_chr6_22282246_22302036	0/0	c0005	684	2	2	0	0	0	0	copy fasta	PRL	chr6	22282246	22302036
PRL_chr6_22282246_22302036	0/0	c0006	684	1	0	1	0	0	0	copy fasta	PRL	chr6	22282246	22302036
PRL_chr6_22282246_22302036	0/0	c0007	684	1	1	0	0	0	0	copy fasta	PRL	chr6	22282246	22302036
PRL_chr6_22282246_22302036	0/0	c0008	684	1	0	1	0	0	0	copy fasta	PRL	chr6	22282246	22302036
PRL_chr6_22282246_22302036	0/0	c0009	684	1	1	0	0	0	0	copy fasta	PRL	chr6	22282246	22302036
PRL_chr6_22282246_22302036	0/0	c0010	684	1	1	0	0	0	0	copy fasta	PRL	chr6	22282246	22302036
PRM1_chr16_11275841_11286330	1/0	c0001	156	215	47	36	110	1	20	copy fasta	PRM1	chr16	11275841	11286330
PRM1_chr16_11275841_11286330	0/1	c0002	156	191	51	38	57	17	27	copy fasta	PRM1	chr16	11275841	11286330
PRM1_chr16_11275841_11286330	0/0	c0003	156	3	0	0	3	0	0	copy fasta	PRM1	chr16	11275841	11286330
PRM1_chr16_11275841_11286330	0/0	c0004	156	1	0	0	0	0	1	copy fasta	PRM1	chr16	11275841	11286330
PRM2_chr16_11270639_11281480	1/1	c0001	309	400	94	77	165	16	46	copy fasta	PRM2	chr16	11270639	11281480
PRM2_chr16_11270639_11281480	0/0	c0002	309	1	0	1	0	0	0	copy fasta	PRM2	chr16	11270639	11281480
PRM2_chr16_11270639_11281480	0/0	c0003	309	1	0	0	1	0	0	copy fasta	PRM2	chr16	11270639	11281480
PRM3_chr16_11268199_11278629	0/0	c0001	312	238	68	55	69	12	34	copy fasta	PRM3	chr16	11268199	11278629
PRM3_chr16_11268199_11278629	1/0	c0002	312	129	11	10	96	4	7	copy fasta	PRM3	chr16	11268199	11278629
PRM3_chr16_11268199_11278629	0/1	c0003	312	30	1	11	13	0	4	copy fasta	PRM3	chr16	11268199	11278629
PRM3_chr16_11268199_11278629	0/0	c0004	312	11	10	1	0	0	0	copy fasta	PRM3	chr16	11268199	11278629
PRM3_chr16_11268199_11278629	0/0	c0005	312	2	1	1	0	0	0	copy fasta	PRM3	chr16	11268199	11278629
PRM3_chr16_11268199_11278629	0/0	c0006	312	1	0	0	0	0	1	copy fasta	PRM3	chr16	11268199	11278629
PRM3_chr16_11268199_11278629	0/0	c0007	312	1	1	0	0	0	0	copy fasta	PRM3	chr16	11268199	11278629
PRM3_chr16_11268199_11278629	0/0	c0008	312	1	0	0	1	0	0	copy fasta	PRM3	chr16	11268199	11278629
PRM3_chr16_11268199_11278629	0/0	c0009	336	1	0	0	1	0	0	copy fasta	PRM3	chr16	11268199	11278629
PRMT1_chr19_49672271_49693447	1/1	c0001	1116	377	87	76	151	14	47	copy fasta	PRMT1	chr19	49672271	49693447
PRMT1_chr19_49672271_49693447	0/0	c0002	1116	11	0	1	10	0	0	copy fasta	PRMT1	chr19	49672271	49693447
PRMT1_chr19_49672271_49693447	0/0	c0003	1116	2	0	0	0	0	2	copy fasta	PRMT1	chr19	49672271	49693447
PRMT1_chr19_49672271_49693447	0/0	c0004	1116	1	0	0	0	0	1	copy fasta	PRMT1	chr19	49672271	49693447
PRMT1_chr19_49672271_49693447	0/0	c0005	1116	1	0	1	0	0	0	copy fasta	PRMT1	chr19	49672271	49693447
PRMT1_chr19_49672271_49693447	0/0	c0006	1116	1	1	0	0	0	0	copy fasta	PRMT1	chr19	49672271	49693447
PRMT1_chr19_49672271_49693447	0/0	c0007	1116	1	0	1	0	0	0	copy fasta	PRMT1	chr19	49672271	49693447
PRMT1_chr19_49672271_49693447	0/0	c0008	1116	1	1	0	0	0	0	copy fasta	PRMT1	chr19	49672271	49693447
PRMT1_chr19_49672271_49693447	0/0	c0009	1116	1	1	0	0	0	0	copy fasta	PRMT1	chr19	49672271	49693447
PRMT1_chr19_49672271_49693447	0/0	c0010	1116	1	0	0	1	0	0	copy fasta	PRMT1	chr19	49672271	49693447
PRMT1_chr19_49672271_49693447	0/0	c0011	1116	1	0	1	0	0	0	copy fasta	PRMT1	chr19	49672271	49693447
PRMT2_chr21_46630674_46670124	0/1	c0001	1302	377	83	64	172	14	43	copy fasta	PRMT2	chr21	46630674	46670124
PRMT2_chr21_46630674_46670124	1/0	c0002	1302	46	15	10	17	0	3	copy fasta	PRMT2	chr21	46630674	46670124