JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRMT2_chr21_46630674_46670124	0/0	c0003	1302	2	0	2	0	0	0	copy fasta	PRMT2	chr21	46630674	46670124
PRMT2_chr21_46630674_46670124	0/0	c0004	1344	1	0	0	1	0	0	copy fasta	PRMT2	chr21	46630674	46670124
PRMT3_chr11_20382716_20514338	1/1	c0001	1596	326	71	60	146	14	33	copy fasta	PRMT3	chr11	20382716	20514338
PRMT3_chr11_20382716_20514338	0/0	c0002	1596	23	23	0	0	0	0	copy fasta	PRMT3	chr11	20382716	20514338
PRMT3_chr11_20382716_20514338	0/0	c0003	1596	13	0	0	13	0	0	copy fasta	PRMT3	chr11	20382716	20514338
PRMT3_chr11_20382716_20514338	0/0	c0004	1596	4	0	0	4	0	0	copy fasta	PRMT3	chr11	20382716	20514338
PRMT3_chr11_20382716_20514338	0/0	c0005	1596	3	3	0	0	0	0	copy fasta	PRMT3	chr11	20382716	20514338
PRMT3_chr11_20382716_20514338	0/0	c0006	1596	2	0	0	2	0	0	copy fasta	PRMT3	chr11	20382716	20514338
PRMT3_chr11_20382716_20514338	0/0	c0007	1596	1	0	1	0	0	0	copy fasta	PRMT3	chr11	20382716	20514338
PRMT3_chr11_20382716_20514338	0/0	c0008	1596	1	0	0	1	0	0	copy fasta	PRMT3	chr11	20382716	20514338
PRMT3_chr11_20382716_20514338	0/0	c0009	1596	1	1	0	0	0	0	copy fasta	PRMT3	chr11	20382716	20514338
PRMT3_chr11_20382716_20514338	0/0	c0010	1596	1	0	0	1	0	0	copy fasta	PRMT3	chr11	20382716	20514338
PRMT3_chr11_20382716_20514338	0/0	c0011	1596	1	0	0	1	0	0	copy fasta	PRMT3	chr11	20382716	20514338
PRMT3_chr11_20382716_20514338	0/0	c0012	1596	1	0	0	1	0	0	copy fasta	PRMT3	chr11	20382716	20514338
PRMT3_chr11_20382716_20514338	0/0	c0013	1596	1	0	0	1	0	0	copy fasta	PRMT3	chr11	20382716	20514338
PRMT3_chr11_20382716_20514338	0/0	c0014	1596	1	0	0	0	0	1	copy fasta	PRMT3	chr11	20382716	20514338
PRMT3_chr11_20382716_20514338	0/0	c0015	1596	1	0	1	0	0	0	copy fasta	PRMT3	chr11	20382716	20514338
PRMT5_chr14_22915529_22934376	1/1	c0001	1914	346	85	73	138	12	36	copy fasta	PRMT5	chr14	22915529	22934376
PRMT5_chr14_22915529_22934376	0/0	c0002	1914	8	8	0	0	0	0	copy fasta	PRMT5	chr14	22915529	22934376
PRMT5_chr14_22915529_22934376	0/0	c0003	1914	3	2	1	0	0	0	copy fasta	PRMT5	chr14	22915529	22934376
PRMT5_chr14_22915529_22934376	0/0	c0004	1914	3	3	0	0	0	0	copy fasta	PRMT5	chr14	22915529	22934376
PRMT5_chr14_22915529_22934376	0/0	c0005	1914	1	0	0	1	0	0	copy fasta	PRMT5	chr14	22915529	22934376
PRMT5_chr14_22915529_22934376	0/0	c0006	1914	1	1	0	0	0	0	copy fasta	PRMT5	chr14	22915529	22934376
PRMT5_chr14_22915529_22934376	0/0	c0007	1914	1	0	0	1	0	0	copy fasta	PRMT5	chr14	22915529	22934376
PRMT5_chr14_22915529_22934376	0/0	c0008	1914	1	1	0	0	0	0	copy fasta	PRMT5	chr14	22915529	22934376
PRMT6_chr1_107051674_107064294	1/1	c0001	1128	332	79	60	139	15	37	copy fasta	PRMT6	chr1	107051674	107064294
PRMT6_chr1_107051674_107064294	0/0	c0002	1128	54	1	6	37	3	7	copy fasta	PRMT6	chr1	107051674	107064294
PRMT6_chr1_107051674_107064294	0/0	c0003	1128	1	1	0	0	0	0	copy fasta	PRMT6	chr1	107051674	107064294
PRMT6_chr1_107051674_107064294	0/0	c0004	1128	1	1	0	0	0	0	copy fasta	PRMT6	chr1	107051674	107064294
PRMT6_chr1_107051674_107064294	0/0	c0005	1128	1	1	0	0	0	0	copy fasta	PRMT6	chr1	107051674	107064294
PRMT6_chr1_107051674_107064294	0/0	c0006	1128	1	1	0	0	0	0	copy fasta	PRMT6	chr1	107051674	107064294
PRMT7_chr16_68306019_68363584	0/1	c0001	2079	135	41	27	47	3	16	copy fasta	PRMT7	chr16	68306019	68363584
PRMT7_chr16_68306019_68363584	1/0	c0002	2079	73	14	17	29	2	10	copy fasta	PRMT7	chr16	68306019	68363584
PRMT7_chr16_68306019_68363584	0/0	c0003	2079	41	18	5	13	0	5	copy fasta	PRMT7	chr16	68306019	68363584
PRMT7_chr16_68306019_68363584	0/0	c0004	2079	8	3	4	0	1	0	copy fasta	PRMT7	chr16	68306019	68363584
PRMT7_chr16_68306019_68363584	0/0	c0005	2079	7	6	1	0	0	0	copy fasta	PRMT7	chr16	68306019	68363584
PRMT7_chr16_68306019_68363584	0/0	c0006	2079	3	3	0	0	0	0	copy fasta	PRMT7	chr16	68306019	68363584
PRMT7_chr16_68306019_68363584	0/0	c0007	2079	2	2	0	0	0	0	copy fasta	PRMT7	chr16	68306019	68363584
PRMT7_chr16_68306019_68363584	0/0	c0008	2079	2	0	1	1	0	0	copy fasta	PRMT7	chr16	68306019	68363584
PRMT7_chr16_68306019_68363584	0/0	c0009	2079	2	0	2	0	0	0	copy fasta	PRMT7	chr16	68306019	68363584
PRMT7_chr16_68306019_68363584	0/0	c0010	2079	1	0	0	0	0	1	copy fasta	PRMT7	chr16	68306019	68363584
PRMT7_chr16_68306019_68363584	0/0	c0011	2079	1	1	0	0	0	0	copy fasta	PRMT7	chr16	68306019	68363584
PRMT7_chr16_68306019_68363584	0/0	c0012	2079	1	0	0	0	0	1	copy fasta	PRMT7	chr16	68306019	68363584
PRMT7_chr16_68306019_68363584	0/0	c0013	2079	1	0	0	1	0	0	copy fasta	PRMT7	chr16	68306019	68363584
PRMT7_chr16_68306019_68363584	0/0	c0014	2079	1	0	1	0	0	0	copy fasta	PRMT7	chr16	68306019	68363584
PRMT7_chr16_68306019_68363584	0/0	c0015	2079	1	0	0	1	0	0	copy fasta	PRMT7	chr16	68306019	68363584
PRMT7_chr16_68306019_68363584	0/0	c0016	2079	1	0	0	1	0	0	copy fasta	PRMT7	chr16	68306019	68363584
PRMT7_chr16_68306019_68363584	0/0	c0017	2079	1	0	0	1	0	0	copy fasta	PRMT7	chr16	68306019	68363584
PRMT7_chr16_68306019_68363584	0/0	c0018	2079	1	0	0	0	0	1	copy fasta	PRMT7	chr16	68306019	68363584
PRMT7_chr16_68306019_68363584	0/0	c0019	2079	1	1	0	0	0	0	copy fasta	PRMT7	chr16	68306019	68363584