JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRMT7_chr16_68306019_68363584	0/0	c0020	2079	1	1	0	0	0	0	copy fasta	PRMT7	chr16	68306019	68363584
PRMT8_chr12_3486203_3598973	1/1	c0001	1185	311	70	60	131	16	32	copy fasta	PRMT8	chr12	3486203	3598973
PRMT8_chr12_3486203_3598973	0/0	c0002	1185	36	14	5	15	0	2	copy fasta	PRMT8	chr12	3486203	3598973
PRMT8_chr12_3486203_3598973	0/0	c0003	1185	4	0	0	4	0	0	copy fasta	PRMT8	chr12	3486203	3598973
PRMT8_chr12_3486203_3598973	0/0	c0004	1185	4	2	2	0	0	0	copy fasta	PRMT8	chr12	3486203	3598973
PRMT8_chr12_3486203_3598973	0/0	c0005	1185	4	3	1	0	0	0	copy fasta	PRMT8	chr12	3486203	3598973
PRMT8_chr12_3486203_3598973	0/0	c0006	1185	1	0	0	1	0	0	copy fasta	PRMT8	chr12	3486203	3598973
PRMT8_chr12_3486203_3598973	0/0	c0007	1185	1	0	0	1	0	0	copy fasta	PRMT8	chr12	3486203	3598973
PRMT8_chr12_3486203_3598973	0/0	c0008	1185	1	1	0	0	0	0	copy fasta	PRMT8	chr12	3486203	3598973
PRMT8_chr12_3486203_3598973	0/0	c0009	1185	1	0	0	1	0	0	copy fasta	PRMT8	chr12	3486203	3598973
PRMT8_chr12_3486203_3598973	0/0	c0010	1185	1	0	0	1	0	0	copy fasta	PRMT8	chr12	3486203	3598973
PRMT9_chr4_147632785_147689163	1/1	c0001	2538	170	67	20	61	4	16	copy fasta	PRMT9	chr4	147632785	147689163
PRMT9_chr4_147632785_147689163	0/0	c0002	2538	14	0	0	14	0	0	copy fasta	PRMT9	chr4	147632785	147689163
PRMT9_chr4_147632785_147689163	0/0	c0003	2538	9	9	0	0	0	0	copy fasta	PRMT9	chr4	147632785	147689163
PRMT9_chr4_147632785_147689163	0/0	c0004	2538	6	1	0	5	0	0	copy fasta	PRMT9	chr4	147632785	147689163
PRMT9_chr4_147632785_147689163	0/0	c0005	2538	6	4	0	2	0	0	copy fasta	PRMT9	chr4	147632785	147689163
PRMT9_chr4_147632785_147689163	0/0	c0006	2538	4	4	0	0	0	0	copy fasta	PRMT9	chr4	147632785	147689163
PRMT9_chr4_147632785_147689163	0/0	c0007	2538	3	1	0	0	1	1	copy fasta	PRMT9	chr4	147632785	147689163
PRMT9_chr4_147632785_147689163	0/0	c0008	2538	2	0	1	0	1	0	copy fasta	PRMT9	chr4	147632785	147689163
PRMT9_chr4_147632785_147689163	0/0	c0009	2538	1	0	0	1	0	0	copy fasta	PRMT9	chr4	147632785	147689163
PRMT9_chr4_147632785_147689163	0/0	c0010	2538	1	0	1	0	0	0	copy fasta	PRMT9	chr4	147632785	147689163
PRMT9_chr4_147632785_147689163	0/0	c0011	2538	1	1	0	0	0	0	copy fasta	PRMT9	chr4	147632785	147689163
PRMT9_chr4_147632785_147689163	0/0	c0012	2538	1	0	0	0	0	1	copy fasta	PRMT9	chr4	147632785	147689163
PRMT9_chr4_147632785_147689163	0/0	c0013	2538	1	1	0	0	0	0	copy fasta	PRMT9	chr4	147632785	147689163
PRMT9_chr4_147632785_147689163	0/0	c0014	2538	1	1	0	0	0	0	copy fasta	PRMT9	chr4	147632785	147689163
PRMT9_chr4_147632785_147689163	0/0	c0015	2538	1	1	0	0	0	0	copy fasta	PRMT9	chr4	147632785	147689163
PRMT9_chr4_147632785_147689163	0/0	c0016	2538	1	0	0	1	0	0	copy fasta	PRMT9	chr4	147632785	147689163
PRND_chr20_4716909_4733460	1/0	c0001	531	276	40	48	158	7	22	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/1	c0002	531	191	56	32	67	10	25	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	c0003	531	4	1	2	0	1	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	c0004	531	3	0	0	3	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	c0005	531	2	0	0	2	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	c0006	531	2	0	2	0	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	c0007	531	1	0	0	0	0	1	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	c0008	531	1	1	0	0	0	0	copy fasta	PRND	chr20	4716909	4733460
PRNP_chr20_4681456_4706588	1/0	c0001	762	204	39	44	86	11	23	copy fasta	PRNP	chr20	4681456	4706588
PRNP_chr20_4681456_4706588	0/0	c0002	762	56	11	25	4	5	11	copy fasta	PRNP	chr20	4681456	4706588
PRNP_chr20_4681456_4706588	0/0	c0003	738	22	19	0	1	2	0	copy fasta	PRNP	chr20	4681456	4706588
PRNP_chr20_4681456_4706588	0/0	c0004	762	15	12	2	0	0	1	copy fasta	PRNP	chr20	4681456	4706588
PRNP_chr20_4681456_4706588	0/0	c0005	762	14	0	0	10	0	4	copy fasta	PRNP	chr20	4681456	4706588
PRNP_chr20_4681456_4706588	0/0	c0006	762	11	11	0	0	0	0	copy fasta	PRNP	chr20	4681456	4706588
PRNP_chr20_4681456_4706588	0/0	c0007	762	2	0	0	2	0	0	copy fasta	PRNP	chr20	4681456	4706588
PRNP_chr20_4681456_4706588	0/0	c0008	762	2	0	0	2	0	0	copy fasta	PRNP	chr20	4681456	4706588
PRNP_chr20_4681456_4706588	0/0	c0009	738	1	0	1	0	0	0	copy fasta	PRNP	chr20	4681456	4706588
PRNP_chr20_4681456_4706588	0/1	c0010	738	1	0	0	0	0	0	copy fasta	PRNP	chr20	4681456	4706588
PRNP_chr20_4681456_4706588	0/0	c0011	762	1	0	0	1	0	0	copy fasta	PRNP	chr20	4681456	4706588
PRNP_chr20_4681456_4706588	0/0	c0012	732	1	0	0	1	0	0	copy fasta	PRNP	chr20	4681456	4706588
PRNP_chr20_4681456_4706588	0/0	c0013	762	1	0	0	1	0	0	copy fasta	PRNP	chr20	4681456	4706588
PRNP_chr20_4681456_4706588	0/0	c0014	738	1	0	0	0	0	1	copy fasta	PRNP	chr20	4681456	4706588
PROB1_chr5_139385592_139400104	0/0	c0001	3048	121	7	33	56	6	19	copy fasta	PROB1	chr5	139385592	139400104