JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PROB1_chr5_139385592_139400104	0/0	c0002	3048	81	6	8	49	4	14	copy fasta	PROB1	chr5	139385592	139400104
PROB1_chr5_139385592_139400104	0/1	c0003	3048	63	42	12	4	0	4	copy fasta	PROB1	chr5	139385592	139400104
PROB1_chr5_139385592_139400104	0/0	c0004	3048	42	9	7	20	2	4	copy fasta	PROB1	chr5	139385592	139400104
PROB1_chr5_139385592_139400104	1/0	c0005	3048	14	6	0	7	0	0	copy fasta	PROB1	chr5	139385592	139400104
PROB1_chr5_139385592_139400104	0/0	c0006	3048	3	0	0	3	0	0	copy fasta	PROB1	chr5	139385592	139400104
PROB1_chr5_139385592_139400104	0/0	c0007	3048	3	3	0	0	0	0	copy fasta	PROB1	chr5	139385592	139400104
PROB1_chr5_139385592_139400104	0/0	c0008	3048	2	0	0	2	0	0	copy fasta	PROB1	chr5	139385592	139400104
PROB1_chr5_139385592_139400104	0/0	c0009	3048	2	2	0	0	0	0	copy fasta	PROB1	chr5	139385592	139400104
PROB1_chr5_139385592_139400104	0/0	c0010	3048	2	0	2	0	0	0	copy fasta	PROB1	chr5	139385592	139400104
PROB1_chr5_139385592_139400104	0/0	c0011	3048	1	0	0	1	0	0	copy fasta	PROB1	chr5	139385592	139400104
PROB1_chr5_139385592_139400104	0/0	c0012	3048	1	0	0	1	0	0	copy fasta	PROB1	chr5	139385592	139400104
PROB1_chr5_139385592_139400104	0/0	c0013	3048	1	0	1	0	0	0	copy fasta	PROB1	chr5	139385592	139400104
PROB1_chr5_139385592_139400104	0/0	c0014	3048	1	0	0	1	0	0	copy fasta	PROB1	chr5	139385592	139400104
PROB1_chr5_139385592_139400104	0/0	c0015	3048	1	1	0	0	0	0	copy fasta	PROB1	chr5	139385592	139400104
PROB1_chr5_139385592_139400104	0/0	c0016	3048	1	1	0	0	0	0	copy fasta	PROB1	chr5	139385592	139400104
PROB1_chr5_139385592_139400104	0/0	c0017	3048	1	1	0	0	0	0	copy fasta	PROB1	chr5	139385592	139400104
PROB1_chr5_139385592_139400104	0/0	c0018	3048	1	1	0	0	0	0	copy fasta	PROB1	chr5	139385592	139400104
PROB1_chr5_139385592_139400104	0/0	c0019	3048	1	0	0	0	0	1	copy fasta	PROB1	chr5	139385592	139400104
PROB1_chr5_139385592_139400104	0/0	c0020	3048	1	0	0	0	0	1	copy fasta	PROB1	chr5	139385592	139400104
PROB1_chr5_139385592_139400104	0/0	c0021	3048	1	0	0	1	0	0	copy fasta	PROB1	chr5	139385592	139400104
PROB1_chr5_139385592_139400104	0/0	c0022	3048	1	0	0	0	0	1	copy fasta	PROB1	chr5	139385592	139400104
PROB1_chr5_139385592_139400104	0/0	c0023	3048	1	0	1	0	0	0	copy fasta	PROB1	chr5	139385592	139400104
PROB1_chr5_139385592_139400104	0/0	c0024	3048	1	0	0	1	0	0	copy fasta	PROB1	chr5	139385592	139400104
PROB1_chr5_139385592_139400104	0/0	c0025	3048	1	1	0	0	0	0	copy fasta	PROB1	chr5	139385592	139400104
PROCA1_chr17_28698197_28716888	1/1	c0001	1095	306	72	65	117	8	42	copy fasta	PROCA1	chr17	28698197	28716888
PROCA1_chr17_28698197_28716888	0/0	c0002	1095	3	0	0	3	0	0	copy fasta	PROCA1	chr17	28698197	28716888
PROCA1_chr17_28698197_28716888	0/0	c0003	1095	2	1	1	0	0	0	copy fasta	PROCA1	chr17	28698197	28716888
PROCA1_chr17_28698197_28716888	0/0	c0004	1095	1	0	0	0	0	1	copy fasta	PROCA1	chr17	28698197	28716888
PROCA1_chr17_28698197_28716888	0/0	c0005	1095	1	1	0	0	0	0	copy fasta	PROCA1	chr17	28698197	28716888
PROCA1_chr17_28698197_28716888	0/0	c0006	1095	1	0	0	0	0	1	copy fasta	PROCA1	chr17	28698197	28716888
PROCA1_chr17_28698197_28716888	0/0	c0007	1095	1	1	0	0	0	0	copy fasta	PROCA1	chr17	28698197	28716888
PROCA1_chr17_28698197_28716888	0/0	c0008	1095	1	0	0	1	0	0	copy fasta	PROCA1	chr17	28698197	28716888
PROCA1_chr17_28698197_28716888	0/0	c0009	1095	1	0	1	0	0	0	copy fasta	PROCA1	chr17	28698197	28716888
PROCA1_chr17_28698197_28716888	0/0	c0010	1095	1	1	0	0	0	0	copy fasta	PROCA1	chr17	28698197	28716888
PROCA1_chr17_28698197_28716888	0/0	c0011	1095	1	0	1	0	0	0	copy fasta	PROCA1	chr17	28698197	28716888
PROCA1_chr17_28698197_28716888	0/0	c0012	1095	1	0	0	1	0	0	copy fasta	PROCA1	chr17	28698197	28716888
PROCR_chr20_35167072_35182362	1/1	c0001	717	335	84	67	134	14	34	copy fasta	PROCR	chr20	35167072	35182362
PROCR_chr20_35167072_35182362	0/0	c0002	717	53	14	6	19	2	12	copy fasta	PROCR	chr20	35167072	35182362
PROCR_chr20_35167072_35182362	0/0	c0003	717	2	1	0	1	0	0	copy fasta	PROCR	chr20	35167072	35182362
PROCR_chr20_35167072_35182362	0/0	c0004	717	1	1	0	0	0	0	copy fasta	PROCR	chr20	35167072	35182362
PROCR_chr20_35167072_35182362	0/0	c0005	717	1	0	1	0	0	0	copy fasta	PROCR	chr20	35167072	35182362
PROC_chr2_127413427_127434242	0/1	c0001	1386	177	36	37	88	4	11	copy fasta	PROC	chr2	127413427	127434242
PROC_chr2_127413427_127434242	1/0	c0002	1386	144	24	18	74	4	23	copy fasta	PROC	chr2	127413427	127434242
PROC_chr2_127413427_127434242	0/0	c0003	1386	59	25	23	0	2	9	copy fasta	PROC	chr2	127413427	127434242
PROC_chr2_127413427_127434242	0/0	c0004	1386	17	0	0	16	0	1	copy fasta	PROC	chr2	127413427	127434242
PROC_chr2_127413427_127434242	0/0	c0005	1386	5	5	0	0	0	0	copy fasta	PROC	chr2	127413427	127434242
PROC_chr2_127413427_127434242	0/0	c0006	1386	4	4	0	0	0	0	copy fasta	PROC	chr2	127413427	127434242
PROC_chr2_127413427_127434242	0/0	c0007	1386	2	0	0	1	0	1	copy fasta	PROC	chr2	127413427	127434242
PROC_chr2_127413427_127434242	0/0	c0008	1386	2	2	0	0	0	0	copy fasta	PROC	chr2	127413427	127434242
PROC_chr2_127413427_127434242	0/0	c0009	1386	2	0	2	0	0	0	copy fasta	PROC	chr2	127413427	127434242