JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PROC_chr2_127413427_127434242	0/0	c0010	1386	1	0	0	1	0	0	copy fasta	PROC	chr2	127413427	127434242
PROC_chr2_127413427_127434242	0/0	c0011	1386	1	1	0	0	0	0	copy fasta	PROC	chr2	127413427	127434242
PROC_chr2_127413427_127434242	0/0	c0012	1386	1	0	0	0	0	1	copy fasta	PROC	chr2	127413427	127434242
PROC_chr2_127413427_127434242	0/0	c0013	1386	1	0	0	1	0	0	copy fasta	PROC	chr2	127413427	127434242
PROC_chr2_127413427_127434242	0/0	c0014	1386	1	0	0	1	0	0	copy fasta	PROC	chr2	127413427	127434242
PROC_chr2_127413427_127434242	0/0	c0015	1386	1	1	0	0	0	0	copy fasta	PROC	chr2	127413427	127434242
PRODH2_chr19_35794988_35817845	1/1	c0001	1383	234	45	54	83	8	42	copy fasta	PRODH2	chr19	35794988	35817845
PRODH2_chr19_35794988_35817845	0/0	c0002	1383	76	3	9	55	4	5	copy fasta	PRODH2	chr19	35794988	35817845
PRODH2_chr19_35794988_35817845	0/0	c0003	1383	28	2	4	22	0	0	copy fasta	PRODH2	chr19	35794988	35817845
PRODH2_chr19_35794988_35817845	0/0	c0004	1383	12	8	0	4	0	0	copy fasta	PRODH2	chr19	35794988	35817845
PRODH2_chr19_35794988_35817845	0/0	c0005	1383	11	0	2	9	0	0	copy fasta	PRODH2	chr19	35794988	35817845
PRODH2_chr19_35794988_35817845	0/0	c0006	1383	10	8	0	2	0	0	copy fasta	PRODH2	chr19	35794988	35817845
PRODH2_chr19_35794988_35817845	0/0	c0007	1383	10	1	8	0	0	1	copy fasta	PRODH2	chr19	35794988	35817845
PRODH2_chr19_35794988_35817845	0/0	c0008	1383	6	6	0	0	0	0	copy fasta	PRODH2	chr19	35794988	35817845
PRODH2_chr19_35794988_35817845	0/0	c0009	1383	6	0	2	4	0	0	copy fasta	PRODH2	chr19	35794988	35817845
PRODH2_chr19_35794988_35817845	0/0	c0010	1383	4	4	0	0	0	0	copy fasta	PRODH2	chr19	35794988	35817845
PRODH2_chr19_35794988_35817845	0/0	c0011	1383	4	4	0	0	0	0	copy fasta	PRODH2	chr19	35794988	35817845
PRODH2_chr19_35794988_35817845	0/0	c0012	1383	2	2	0	0	0	0	copy fasta	PRODH2	chr19	35794988	35817845
PRODH2_chr19_35794988_35817845	0/0	c0013	1383	2	2	0	0	0	0	copy fasta	PRODH2	chr19	35794988	35817845
PRODH2_chr19_35794988_35817845	0/0	c0014	1383	2	2	0	0	0	0	copy fasta	PRODH2	chr19	35794988	35817845
PRODH2_chr19_35794988_35817845	0/0	c0015	1383	2	0	0	2	0	0	copy fasta	PRODH2	chr19	35794988	35817845
PRODH2_chr19_35794988_35817845	0/0	c0016	1383	2	2	0	0	0	0	copy fasta	PRODH2	chr19	35794988	35817845
PRODH2_chr19_35794988_35817845	0/0	c0017	1383	2	0	0	2	0	0	copy fasta	PRODH2	chr19	35794988	35817845
PRODH2_chr19_35794988_35817845	0/0	c0018	1383	2	0	0	2	0	0	copy fasta	PRODH2	chr19	35794988	35817845
PRODH2_chr19_35794988_35817845	0/0	c0019	1383	2	2	0	0	0	0	copy fasta	PRODH2	chr19	35794988	35817845
PRODH2_chr19_35794988_35817845	0/0	c0020	1383	2	0	1	0	0	1	copy fasta	PRODH2	chr19	35794988	35817845
PRODH2_chr19_35794988_35817845	0/0	c0021	1383	1	1	0	0	0	0	copy fasta	PRODH2	chr19	35794988	35817845
PRODH2_chr19_35794988_35817845	0/0	c0022	1383	1	0	0	1	0	0	copy fasta	PRODH2	chr19	35794988	35817845
PRODH2_chr19_35794988_35817845	0/0	c0023	1383	1	0	0	1	0	0	copy fasta	PRODH2	chr19	35794988	35817845
PRODH2_chr19_35794988_35817845	0/0	c0024	1383	1	0	0	1	0	0	copy fasta	PRODH2	chr19	35794988	35817845
PRODH2_chr19_35794988_35817845	0/0	c0025	1383	1	1	0	0	0	0	copy fasta	PRODH2	chr19	35794988	35817845
PRODH2_chr19_35794988_35817845	0/0	c0026	1383	1	1	0	0	0	0	copy fasta	PRODH2	chr19	35794988	35817845
PRODH2_chr19_35794988_35817845	0/0	c0027	1383	1	1	0	0	0	0	copy fasta	PRODH2	chr19	35794988	35817845
PRODH2_chr19_35794988_35817845	0/0	c0028	1383	1	0	0	0	0	1	copy fasta	PRODH2	chr19	35794988	35817845
PRODH2_chr19_35794988_35817845	0/0	c0029	1383	1	1	0	0	0	0	copy fasta	PRODH2	chr19	35794988	35817845
PRODH_chr22_18907781_18941293	0/1	c0001	1803	154	22	19	91	3	18	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0002	1803	23	1	10	1	6	5	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0003	1803	21	4	4	9	0	4	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0004	1803	9	0	3	3	0	3	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0005	1803	8	0	0	8	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0006	1803	8	0	2	6	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0007	1803	8	0	2	6	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0008	1803	7	0	0	5	0	2	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0009	1803	7	7	0	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0010	1803	7	2	4	0	1	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0011	1803	6	2	1	0	2	1	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0012	1803	6	6	0	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0013	1803	5	0	3	1	0	1	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0014	1803	5	0	1	4	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0015	1803	5	4	0	0	0	1	copy fasta	PRODH	chr22	18907781	18941293