JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRODH_chr22_18907781_18941293	0/0	c0016	1803	5	5	0	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0017	1803	5	0	0	0	0	5	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0018	1803	4	0	0	4	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0019	1803	4	0	2	1	0	1	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0020	1803	4	0	4	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0021	1803	4	0	0	4	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0022	1803	4	4	0	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0023	1803	3	3	0	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0024	1803	3	0	3	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0025	1803	3	3	0	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0026	1803	3	3	0	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0027	1803	3	1	2	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0028	1803	2	0	2	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0029	1803	2	2	0	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0030	1803	2	0	1	0	1	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0031	1803	2	1	0	1	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0032	1803	2	1	0	1	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0033	1803	2	0	0	0	0	2	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0034	1803	2	0	0	2	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0035	1803	2	0	2	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0036	1803	2	0	0	2	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0037	1803	2	0	0	2	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0038	1803	2	0	1	0	1	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0039	1803	2	2	0	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0040	1803	2	2	0	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0041	1803	2	0	1	0	1	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0042	1803	2	0	0	0	0	2	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0043	1803	2	0	1	0	1	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0044	1803	2	2	0	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0045	1803	2	1	1	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0046	1803	1	0	1	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0047	1803	1	0	0	1	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0048	1803	1	0	1	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0049	1803	1	0	0	1	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0050	1803	1	0	1	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0051	1803	1	0	0	1	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0052	1803	1	0	0	1	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0053	1803	1	1	0	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0054	1803	1	0	1	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0055	1803	1	0	0	0	0	1	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0056	1803	1	1	0	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0057	1803	1	0	0	1	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0058	1803	1	0	0	1	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0059	1803	1	0	0	1	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0060	1803	1	1	0	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0061	1803	1	0	1	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0062	1803	1	0	0	1	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0063	1803	1	0	0	1	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0064	1803	1	0	0	1	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0065	1803	1	0	1	0	0	0	copy fasta	PRODH	chr22	18907781	18941293