JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRODH_chr22_18907781_18941293	0/0	c0066	1803	1	0	0	1	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0067	1803	1	1	0	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0068	1803	1	1	0	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0069	1803	1	0	1	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0070	1803	1	0	0	1	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0071	1803	1	0	0	1	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0072	1803	1	0	0	1	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0073	1803	1	0	0	1	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0074	1803	1	0	0	1	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0075	1803	1	1	0	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0076	1803	1	1	0	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0077	1803	1	0	0	0	0	1	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0078	1803	1	1	0	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0079	1803	1	0	1	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0080	1803	1	0	1	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0081	1803	1	0	1	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0082	1803	1	0	0	1	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0083	1803	1	0	0	0	0	1	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0084	1803	1	1	0	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0085	1803	1	1	0	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0086	1803	1	1	0	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0087	1803	1	1	0	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0088	1803	1	0	1	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0089	1803	1	1	0	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0090	1803	1	1	0	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0091	1803	1	1	0	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0092	1803	1	1	0	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0093	1803	1	1	0	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	c0094	1803	1	1	0	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PROK1_chr1_110446149_110462358	0/0	c0001	318	230	38	37	126	11	18	copy fasta	PROK1	chr1	110446149	110462358
PROK1_chr1_110446149_110462358	1/1	c0002	318	210	46	36	94	5	27	copy fasta	PROK1	chr1	110446149	110462358
PROK1_chr1_110446149_110462358	0/0	c0003	318	10	9	1	0	0	0	copy fasta	PROK1	chr1	110446149	110462358
PROK1_chr1_110446149_110462358	0/0	c0004	318	2	2	0	0	0	0	copy fasta	PROK1	chr1	110446149	110462358
PROK1_chr1_110446149_110462358	0/0	c0005	318	1	0	0	1	0	0	copy fasta	PROK1	chr1	110446149	110462358
PROK1_chr1_110446149_110462358	0/0	c0006	318	1	0	0	0	0	1	copy fasta	PROK1	chr1	110446149	110462358
PROK1_chr1_110446149_110462358	0/0	c0007	318	1	1	0	0	0	0	copy fasta	PROK1	chr1	110446149	110462358
PROK1_chr1_110446149_110462358	0/0	c0008	318	1	0	0	1	0	0	copy fasta	PROK1	chr1	110446149	110462358
PROK2_chr3_71766655_71790148	1/1	c0001	390	435	97	70	202	14	50	copy fasta	PROK2	chr3	71766655	71790148
PROK2_chr3_71766655_71790148	0/0	c0002	390	1	1	0	0	0	0	copy fasta	PROK2	chr3	71766655	71790148
PROK2_chr3_71766655_71790148	0/0	c0003	390	1	0	1	0	0	0	copy fasta	PROK2	chr3	71766655	71790148
PROK2_chr3_71766655_71790148	0/0	c0004	390	1	0	1	0	0	0	copy fasta	PROK2	chr3	71766655	71790148
PROKR1_chr2_68638579_68663251	1/1	c0001	1182	220	20	50	117	9	22	copy fasta	PROKR1	chr2	68638579	68663251
PROKR1_chr2_68638579_68663251	0/0	c0002	1182	128	35	17	48	5	23	copy fasta	PROKR1	chr2	68638579	68663251
PROKR1_chr2_68638579_68663251	0/0	c0003	1182	34	30	3	1	0	0	copy fasta	PROKR1	chr2	68638579	68663251
PROKR1_chr2_68638579_68663251	0/0	c0004	1182	23	10	5	4	2	2	copy fasta	PROKR1	chr2	68638579	68663251
PROKR1_chr2_68638579_68663251	0/0	c0005	1182	22	0	3	18	0	1	copy fasta	PROKR1	chr2	68638579	68663251
PROKR1_chr2_68638579_68663251	0/0	c0006	1182	4	0	1	3	0	0	copy fasta	PROKR1	chr2	68638579	68663251
PROKR1_chr2_68638579_68663251	0/0	c0007	1182	4	4	0	0	0	0	copy fasta	PROKR1	chr2	68638579	68663251
PROKR1_chr2_68638579_68663251	0/0	c0008	1182	3	0	3	0	0	0	copy fasta	PROKR1	chr2	68638579	68663251
PROKR1_chr2_68638579_68663251	0/0	c0009	1199	1	0	0	1	0	0	copy fasta	PROKR1	chr2	68638579	68663251