JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ARSI_chr5_150291343_150307905	0/0	c0004	1710	5	5	0	0	0	0	copy fasta	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	c0005	1710	4	3	1	0	0	0	copy fasta	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	c0006	1710	3	0	0	3	0	0	copy fasta	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	c0007	1710	3	0	2	0	1	0	copy fasta	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	c0008	1710	2	0	0	0	2	0	copy fasta	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	1/0	c0009	1710	2	0	1	0	0	0	copy fasta	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	c0010	1710	1	0	0	1	0	0	copy fasta	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	c0011	1710	1	1	0	0	0	0	copy fasta	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	c0012	1710	1	0	1	0	0	0	copy fasta	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	c0013	1710	1	0	1	0	0	0	copy fasta	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	c0014	1710	1	0	1	0	0	0	copy fasta	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	c0015	1710	1	1	0	0	0	0	copy fasta	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	c0016	1710	1	0	0	0	0	1	copy fasta	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	c0017	1710	1	0	0	1	0	0	copy fasta	ARSI	chr5	150291343	150307905
ARSJ_chr4_113895284_113984647	1/1	c0001	1800	336	85	58	145	8	38	copy fasta	ARSJ	chr4	113895284	113984647
ARSJ_chr4_113895284_113984647	0/0	c0002	1800	5	5	0	0	0	0	copy fasta	ARSJ	chr4	113895284	113984647
ARSJ_chr4_113895284_113984647	0/0	c0003	1800	3	0	0	3	0	0	copy fasta	ARSJ	chr4	113895284	113984647
ARSJ_chr4_113895284_113984647	0/0	c0004	1800	1	0	0	1	0	0	copy fasta	ARSJ	chr4	113895284	113984647
ARSJ_chr4_113895284_113984647	0/0	c0005	1800	1	0	0	1	0	0	copy fasta	ARSJ	chr4	113895284	113984647
ARSJ_chr4_113895284_113984647	0/0	c0006	1800	1	0	1	0	0	0	copy fasta	ARSJ	chr4	113895284	113984647
ARSJ_chr4_113895284_113984647	0/0	c0007	1800	1	1	0	0	0	0	copy fasta	ARSJ	chr4	113895284	113984647
ARSJ_chr4_113895284_113984647	0/0	c0008	1800	1	0	1	0	0	0	copy fasta	ARSJ	chr4	113895284	113984647
ARSJ_chr4_113895284_113984647	0/0	c0009	1800	1	1	0	0	0	0	copy fasta	ARSJ	chr4	113895284	113984647
ARSK_chr5_95550101_95610102	1/0	c0001	1611	263	52	54	116	12	28	copy fasta	ARSK	chr5	95550101	95610102
ARSK_chr5_95550101_95610102	0/1	c0002	1611	38	3	1	29	0	4	copy fasta	ARSK	chr5	95550101	95610102
ARSK_chr5_95550101_95610102	0/0	c0003	1611	6	6	0	0	0	0	copy fasta	ARSK	chr5	95550101	95610102
ARSK_chr5_95550101_95610102	0/0	c0004	1611	6	6	0	0	0	0	copy fasta	ARSK	chr5	95550101	95610102
ARSK_chr5_95550101_95610102	0/0	c0005	1611	5	5	0	0	0	0	copy fasta	ARSK	chr5	95550101	95610102
ARSK_chr5_95550101_95610102	0/0	c0006	1611	3	0	0	3	0	0	copy fasta	ARSK	chr5	95550101	95610102
ARSK_chr5_95550101_95610102	0/0	c0007	1611	2	0	0	0	2	0	copy fasta	ARSK	chr5	95550101	95610102
ARSK_chr5_95550101_95610102	0/0	c0008	1611	2	0	1	0	0	1	copy fasta	ARSK	chr5	95550101	95610102
ARSK_chr5_95550101_95610102	0/0	c0009	1611	2	2	0	0	0	0	copy fasta	ARSK	chr5	95550101	95610102
ARSK_chr5_95550101_95610102	0/0	c0010	1611	2	2	0	0	0	0	copy fasta	ARSK	chr5	95550101	95610102
ARSK_chr5_95550101_95610102	0/0	c0011	1611	2	0	0	2	0	0	copy fasta	ARSK	chr5	95550101	95610102
ARSK_chr5_95550101_95610102	0/0	c0012	1611	1	1	0	0	0	0	copy fasta	ARSK	chr5	95550101	95610102
ARSK_chr5_95550101_95610102	0/0	c0013	1611	1	0	0	1	0	0	copy fasta	ARSK	chr5	95550101	95610102
ARSK_chr5_95550101_95610102	0/0	c0014	1611	1	0	0	0	0	1	copy fasta	ARSK	chr5	95550101	95610102
ARSK_chr5_95550101_95610102	0/0	c0015	1611	1	0	0	1	0	0	copy fasta	ARSK	chr5	95550101	95610102
ARSK_chr5_95550101_95610102	0/0	c0016	1611	1	1	0	0	0	0	copy fasta	ARSK	chr5	95550101	95610102
ARSL_chrX_2929521_2969341	0/1	c0001	1770	168	4	21	112	8	22	copy fasta	ARSL	chrX	2929521	2969341
ARSL_chrX_2929521_2969341	1/0	c0002	1770	74	30	19	18	1	5	copy fasta	ARSL	chrX	2929521	2969341
ARSL_chrX_2929521_2969341	0/0	c0003	1770	14	12	2	0	0	0	copy fasta	ARSL	chrX	2929521	2969341
ARSL_chrX_2929521_2969341	0/0	c0004	1770	10	9	1	0	0	0	copy fasta	ARSL	chrX	2929521	2969341
ARSL_chrX_2929521_2969341	0/0	c0005	1770	10	8	2	0	0	0	copy fasta	ARSL	chrX	2929521	2969341
ARSL_chrX_2929521_2969341	0/0	c0006	1770	9	9	0	0	0	0	copy fasta	ARSL	chrX	2929521	2969341
ARSL_chrX_2929521_2969341	0/0	c0007	1770	9	0	7	0	0	2	copy fasta	ARSL	chrX	2929521	2969341
ARSL_chrX_2929521_2969341	0/0	c0008	1770	6	0	0	6	0	0	copy fasta	ARSL	chrX	2929521	2969341
ARSL_chrX_2929521_2969341	0/0	c0009	1770	5	0	2	0	2	1	copy fasta	ARSL	chrX	2929521	2969341
ARSL_chrX_2929521_2969341	0/0	c0010	1770	3	1	1	0	1	0	copy fasta	ARSL	chrX	2929521	2969341
ARSL_chrX_2929521_2969341	0/0	c0011	1770	3	0	0	3	0	0	copy fasta	ARSL	chrX	2929521	2969341