JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PROKR1_chr2_68638579_68663251	0/0	c0010	1182	1	0	0	1	0	0	copy fasta	PROKR1	chr2	68638579	68663251
PROKR1_chr2_68638579_68663251	0/0	c0011	1182	1	0	0	1	0	0	copy fasta	PROKR1	chr2	68638579	68663251
PROKR1_chr2_68638579_68663251	0/0	c0012	1182	1	1	0	0	0	0	copy fasta	PROKR1	chr2	68638579	68663251
PROKR2_chr20_5294218_5321954	0/1	c0001	1155	170	40	31	75	3	20	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	1/0	c0002	1155	119	22	19	64	3	10	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	c0003	1155	70	12	19	27	5	7	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	c0004	1155	44	15	7	10	3	9	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	c0005	1155	5	0	0	5	0	0	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	c0006	1155	4	3	1	0	0	0	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	c0007	1155	2	0	2	0	0	0	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	c0008	1155	2	0	0	2	0	0	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	c0009	1155	1	1	0	0	0	0	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	c0010	1155	1	1	0	0	0	0	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	c0011	1155	1	0	0	1	0	0	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	c0012	1155	1	1	0	0	0	0	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	c0013	1155	1	0	0	1	0	0	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	c0014	1155	1	0	1	0	0	0	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	c0015	1155	1	1	0	0	0	0	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	c0016	1155	1	0	0	1	0	0	copy fasta	PROKR2	chr20	5294218	5321954
PROM1_chr4_15963228_16089023	1/1	c0001	2598	272	58	48	125	11	28	copy fasta	PROM1	chr4	15963228	16089023
PROM1_chr4_15963228_16089023	0/0	c0002	2598	53	5	12	32	1	3	copy fasta	PROM1	chr4	15963228	16089023
PROM1_chr4_15963228_16089023	0/0	c0003	2598	12	12	0	0	0	0	copy fasta	PROM1	chr4	15963228	16089023
PROM1_chr4_15963228_16089023	0/0	c0004	2598	9	7	1	1	0	0	copy fasta	PROM1	chr4	15963228	16089023
PROM1_chr4_15963228_16089023	0/0	c0005	2598	8	8	0	0	0	0	copy fasta	PROM1	chr4	15963228	16089023
PROM1_chr4_15963228_16089023	0/0	c0006	2598	4	0	0	4	0	0	copy fasta	PROM1	chr4	15963228	16089023
PROM1_chr4_15963228_16089023	0/0	c0007	2598	3	0	1	2	0	0	copy fasta	PROM1	chr4	15963228	16089023
PROM1_chr4_15963228_16089023	0/0	c0008	2598	2	0	2	0	0	0	copy fasta	PROM1	chr4	15963228	16089023
PROM1_chr4_15963228_16089023	0/0	c0009	2598	1	1	0	0	0	0	copy fasta	PROM1	chr4	15963228	16089023
PROM1_chr4_15963228_16089023	0/0	c0010	2598	1	0	1	0	0	0	copy fasta	PROM1	chr4	15963228	16089023
PROM1_chr4_15963228_16089023	0/0	c0011	2598	1	0	0	0	0	1	copy fasta	PROM1	chr4	15963228	16089023
PROM1_chr4_15963228_16089023	0/0	c0012	2598	1	0	1	0	0	0	copy fasta	PROM1	chr4	15963228	16089023
PROM1_chr4_15963228_16089023	0/0	c0013	2598	1	0	0	0	0	1	copy fasta	PROM1	chr4	15963228	16089023
PROM1_chr4_15963228_16089023	0/0	c0014	2598	1	0	0	1	0	0	copy fasta	PROM1	chr4	15963228	16089023
PROM1_chr4_15963228_16089023	0/0	c0015	2598	1	0	0	1	0	0	copy fasta	PROM1	chr4	15963228	16089023
PROM1_chr4_15963228_16089023	0/0	c0016	2598	1	0	0	0	0	1	copy fasta	PROM1	chr4	15963228	16089023
PROM1_chr4_15963228_16089023	0/0	c0017	2598	1	1	0	0	0	0	copy fasta	PROM1	chr4	15963228	16089023
PROM1_chr4_15963228_16089023	0/0	c0018	2598	1	1	0	0	0	0	copy fasta	PROM1	chr4	15963228	16089023
PROM1_chr4_15963228_16089023	0/0	c0019	2598	1	1	0	0	0	0	copy fasta	PROM1	chr4	15963228	16089023
PROM2_chr2_95269449_95296302	0/0	c0001	2505	265	66	54	111	8	26	copy fasta	PROM2	chr2	95269449	95296302
PROM2_chr2_95269449_95296302	0/0	c0002	2505	43	0	9	28	1	5	copy fasta	PROM2	chr2	95269449	95296302
PROM2_chr2_95269449_95296302	1/1	c0003	2505	35	8	3	14	1	7	copy fasta	PROM2	chr2	95269449	95296302
PROM2_chr2_95269449_95296302	0/0	c0004	2505	5	3	1	0	0	1	copy fasta	PROM2	chr2	95269449	95296302
PROM2_chr2_95269449_95296302	0/0	c0005	2505	3	2	1	0	0	0	copy fasta	PROM2	chr2	95269449	95296302
PROM2_chr2_95269449_95296302	0/0	c0006	2505	2	0	0	2	0	0	copy fasta	PROM2	chr2	95269449	95296302
PROM2_chr2_95269449_95296302	0/0	c0007	2505	2	0	0	2	0	0	copy fasta	PROM2	chr2	95269449	95296302
PROM2_chr2_95269449_95296302	0/0	c0008	2505	2	0	0	2	0	0	copy fasta	PROM2	chr2	95269449	95296302
PROM2_chr2_95269449_95296302	0/0	c0009	2505	1	1	0	0	0	0	copy fasta	PROM2	chr2	95269449	95296302
PROM2_chr2_95269449_95296302	0/0	c0010	2505	1	0	0	0	0	1	copy fasta	PROM2	chr2	95269449	95296302
PROM2_chr2_95269449_95296302	0/0	c0011	2505	1	0	0	1	0	0	copy fasta	PROM2	chr2	95269449	95296302
PROM2_chr2_95269449_95296302	0/0	c0012	2505	1	0	0	1	0	0	copy fasta	PROM2	chr2	95269449	95296302