JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PROM2_chr2_95269449_95296302	0/0	c0013	2505	1	0	1	0	0	0	copy fasta	PROM2	chr2	95269449	95296302
PROM2_chr2_95269449_95296302	0/0	c0014	2505	1	1	0	0	0	0	copy fasta	PROM2	chr2	95269449	95296302
PROM2_chr2_95269449_95296302	0/0	c0015	2505	1	1	0	0	0	0	copy fasta	PROM2	chr2	95269449	95296302
PROM2_chr2_95269449_95296302	0/0	c0016	2505	1	1	0	0	0	0	copy fasta	PROM2	chr2	95269449	95296302
PROM2_chr2_95269449_95296302	0/0	c0017	2505	1	0	0	0	0	1	copy fasta	PROM2	chr2	95269449	95296302
PROM2_chr2_95269449_95296302	0/0	c0018	2505	1	0	0	1	0	0	copy fasta	PROM2	chr2	95269449	95296302
PROM2_chr2_95269449_95296302	0/0	c0019	2505	1	0	1	0	0	0	copy fasta	PROM2	chr2	95269449	95296302
PROM2_chr2_95269449_95296302	0/0	c0020	2505	1	0	0	0	0	1	copy fasta	PROM2	chr2	95269449	95296302
PROM2_chr2_95269449_95296302	0/0	c0021	2505	1	0	0	1	0	0	copy fasta	PROM2	chr2	95269449	95296302
PROM2_chr2_95269449_95296302	0/0	c0022	2505	1	0	0	1	0	0	copy fasta	PROM2	chr2	95269449	95296302
PROM2_chr2_95269449_95296302	0/0	c0023	2505	1	1	0	0	0	0	copy fasta	PROM2	chr2	95269449	95296302
PROP1_chr5_177987235_178001242	0/0	c0001	681	216	22	35	121	7	31	copy fasta	PROP1	chr5	177987235	178001242
PROP1_chr5_177987235_178001242	0/0	c0002	681	125	45	17	52	5	6	copy fasta	PROP1	chr5	177987235	178001242
PROP1_chr5_177987235_178001242	0/1	c0003	681	66	8	28	18	2	9	copy fasta	PROP1	chr5	177987235	178001242
PROP1_chr5_177987235_178001242	0/0	c0004	681	11	11	0	0	0	0	copy fasta	PROP1	chr5	177987235	178001242
PROP1_chr5_177987235_178001242	0/0	c0005	681	10	8	2	0	0	0	copy fasta	PROP1	chr5	177987235	178001242
PROP1_chr5_177987235_178001242	0/0	c0006	681	3	3	0	0	0	0	copy fasta	PROP1	chr5	177987235	178001242
PROP1_chr5_177987235_178001242	0/0	c0007	681	1	0	0	1	0	0	copy fasta	PROP1	chr5	177987235	178001242
PROP1_chr5_177987235_178001242	0/0	c0008	697	1	0	0	1	0	0	copy fasta	PROP1	chr5	177987235	178001242
PROP1_chr5_177987235_178001242	1/0	c0009	681	1	0	0	0	0	0	copy fasta	PROP1	chr5	177987235	178001242
PROP1_chr5_177987235_178001242	0/0	c0010	681	1	1	0	0	0	0	copy fasta	PROP1	chr5	177987235	178001242
PROP1_chr5_177987235_178001242	0/0	c0011	681	1	0	0	1	0	0	copy fasta	PROP1	chr5	177987235	178001242
PRORP_chr14_35117552_35282622	1/0	c0001	1752	182	52	40	58	7	24	copy fasta	PRORP	chr14	35117552	35282622
PRORP_chr14_35117552_35282622	0/1	c0002	1752	99	26	18	42	4	8	copy fasta	PRORP	chr14	35117552	35282622
PRORP_chr14_35117552_35282622	0/0	c0003	1752	22	2	10	4	1	5	copy fasta	PRORP	chr14	35117552	35282622
PRORP_chr14_35117552_35282622	0/0	c0004	1752	2	0	2	0	0	0	copy fasta	PRORP	chr14	35117552	35282622
PRORP_chr14_35117552_35282622	0/0	c0005	1752	2	2	0	0	0	0	copy fasta	PRORP	chr14	35117552	35282622
PRORP_chr14_35117552_35282622	0/0	c0006	1752	1	1	0	0	0	0	copy fasta	PRORP	chr14	35117552	35282622
PRORP_chr14_35117552_35282622	0/0	c0007	1752	1	1	0	0	0	0	copy fasta	PRORP	chr14	35117552	35282622
PRORP_chr14_35117552_35282622	0/0	c0008	1752	1	1	0	0	0	0	copy fasta	PRORP	chr14	35117552	35282622
PRORP_chr14_35117552_35282622	0/0	c0009	1752	1	0	0	1	0	0	copy fasta	PRORP	chr14	35117552	35282622
PRORP_chr14_35117552_35282622	0/0	c0010	1752	1	0	0	1	0	0	copy fasta	PRORP	chr14	35117552	35282622
PRORP_chr14_35117552_35282622	0/0	c0011	1752	1	0	0	0	0	1	copy fasta	PRORP	chr14	35117552	35282622
PRORP_chr14_35117552_35282622	0/0	c0012	1752	1	1	0	0	0	0	copy fasta	PRORP	chr14	35117552	35282622
PROS1_chr3_93868051_93978896	1/1	c0001	2031	207	79	39	58	8	21	copy fasta	PROS1	chr3	93868051	93978896
PROS1_chr3_93868051_93978896	0/0	c0002	2031	91	10	22	47	4	8	copy fasta	PROS1	chr3	93868051	93978896
PROS1_chr3_93868051_93978896	0/0	c0003	2031	3	0	0	0	0	3	copy fasta	PROS1	chr3	93868051	93978896
PROS1_chr3_93868051_93978896	0/0	c0004	2031	3	3	0	0	0	0	copy fasta	PROS1	chr3	93868051	93978896
PROS1_chr3_93868051_93978896	0/0	c0005	2031	1	0	0	1	0	0	copy fasta	PROS1	chr3	93868051	93978896
PROS1_chr3_93868051_93978896	0/0	c0006	2031	1	0	0	1	0	0	copy fasta	PROS1	chr3	93868051	93978896
PROS1_chr3_93868051_93978896	0/0	c0007	2031	1	0	0	1	0	0	copy fasta	PROS1	chr3	93868051	93978896
PROS1_chr3_93868051_93978896	0/0	c0008	2031	1	1	0	0	0	0	copy fasta	PROS1	chr3	93868051	93978896
PROS1_chr3_93868051_93978896	0/0	c0009	2031	1	1	0	0	0	0	copy fasta	PROS1	chr3	93868051	93978896
PROS1_chr3_93868051_93978896	0/0	c0010	2031	1	0	0	0	0	1	copy fasta	PROS1	chr3	93868051	93978896
PROS1_chr3_93868051_93978896	0/0	c0011	2031	1	0	0	0	0	1	copy fasta	PROS1	chr3	93868051	93978896
PROS1_chr3_93868051_93978896	0/0	c0012	2031	1	0	0	1	0	0	copy fasta	PROS1	chr3	93868051	93978896
PROS1_chr3_93868051_93978896	0/0	c0013	2031	1	0	0	1	0	0	copy fasta	PROS1	chr3	93868051	93978896
PROS1_chr3_93868051_93978896	0/0	c0014	2031	1	0	1	0	0	0	copy fasta	PROS1	chr3	93868051	93978896
PROSER1_chr13_39004865_39043089	1/0	c0001	2835	204	47	33	93	8	22	copy fasta	PROSER1	chr13	39004865	39043089
PROSER1_chr13_39004865_39043089	0/0	c0002	2835	81	24	10	31	2	14	copy fasta	PROSER1	chr13	39004865	39043089