JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PROSER1_chr13_39004865_39043089	0/0	c0003	2835	48	8	7	26	1	6	copy fasta	PROSER1	chr13	39004865	39043089
PROSER1_chr13_39004865_39043089	0/0	c0004	2835	11	10	1	0	0	0	copy fasta	PROSER1	chr13	39004865	39043089
PROSER1_chr13_39004865_39043089	0/1	c0005	2835	10	0	8	0	0	1	copy fasta	PROSER1	chr13	39004865	39043089
PROSER1_chr13_39004865_39043089	0/0	c0006	2835	6	4	2	0	0	0	copy fasta	PROSER1	chr13	39004865	39043089
PROSER1_chr13_39004865_39043089	0/0	c0007	2835	3	0	1	0	2	0	copy fasta	PROSER1	chr13	39004865	39043089
PROSER1_chr13_39004865_39043089	0/0	c0008	2835	3	0	2	0	0	1	copy fasta	PROSER1	chr13	39004865	39043089
PROSER1_chr13_39004865_39043089	0/0	c0009	2847	3	0	0	3	0	0	copy fasta	PROSER1	chr13	39004865	39043089
PROSER1_chr13_39004865_39043089	0/0	c0010	2835	1	0	0	1	0	0	copy fasta	PROSER1	chr13	39004865	39043089
PROSER1_chr13_39004865_39043089	0/0	c0011	2835	1	1	0	0	0	0	copy fasta	PROSER1	chr13	39004865	39043089
PROSER1_chr13_39004865_39043089	0/0	c0012	2835	1	1	0	0	0	0	copy fasta	PROSER1	chr13	39004865	39043089
PROSER1_chr13_39004865_39043089	0/0	c0013	2835	1	0	0	1	0	0	copy fasta	PROSER1	chr13	39004865	39043089
PROSER1_chr13_39004865_39043089	0/0	c0014	2835	1	0	0	0	0	1	copy fasta	PROSER1	chr13	39004865	39043089
PROSER1_chr13_39004865_39043089	0/0	c0015	2835	1	0	0	1	0	0	copy fasta	PROSER1	chr13	39004865	39043089
PROSER1_chr13_39004865_39043089	0/0	c0016	2835	1	0	0	0	1	0	copy fasta	PROSER1	chr13	39004865	39043089
PROSER1_chr13_39004865_39043089	0/0	c0017	2835	1	1	0	0	0	0	copy fasta	PROSER1	chr13	39004865	39043089
PROSER1_chr13_39004865_39043089	0/0	c0018	2835	1	0	1	0	0	0	copy fasta	PROSER1	chr13	39004865	39043089
PROSER1_chr13_39004865_39043089	0/0	c0019	2835	1	0	0	0	0	1	copy fasta	PROSER1	chr13	39004865	39043089
PROSER1_chr13_39004865_39043089	0/0	c0020	2835	1	0	1	0	0	0	copy fasta	PROSER1	chr13	39004865	39043089
PROSER2_chr10_11818356_11877277	1/1	c0001	1308	267	56	50	123	12	24	copy fasta	PROSER2	chr10	11818356	11877277
PROSER2_chr10_11818356_11877277	0/0	c0002	1308	19	14	2	0	0	3	copy fasta	PROSER2	chr10	11818356	11877277
PROSER2_chr10_11818356_11877277	0/0	c0003	1308	13	0	8	0	0	5	copy fasta	PROSER2	chr10	11818356	11877277
PROSER2_chr10_11818356_11877277	0/0	c0004	1308	11	10	1	0	0	0	copy fasta	PROSER2	chr10	11818356	11877277
PROSER2_chr10_11818356_11877277	0/0	c0005	1308	7	0	4	0	3	0	copy fasta	PROSER2	chr10	11818356	11877277
PROSER2_chr10_11818356_11877277	0/0	c0006	1308	4	4	0	0	0	0	copy fasta	PROSER2	chr10	11818356	11877277
PROSER2_chr10_11818356_11877277	0/0	c0007	1308	3	2	1	0	0	0	copy fasta	PROSER2	chr10	11818356	11877277
PROSER2_chr10_11818356_11877277	0/0	c0008	1308	3	3	0	0	0	0	copy fasta	PROSER2	chr10	11818356	11877277
PROSER2_chr10_11818356_11877277	0/0	c0009	1308	3	3	0	0	0	0	copy fasta	PROSER2	chr10	11818356	11877277
PROSER2_chr10_11818356_11877277	0/0	c0010	1308	2	0	2	0	0	0	copy fasta	PROSER2	chr10	11818356	11877277
PROSER2_chr10_11818356_11877277	0/0	c0011	1308	1	0	1	0	0	0	copy fasta	PROSER2	chr10	11818356	11877277
PROSER2_chr10_11818356_11877277	0/0	c0012	1308	1	0	0	0	0	1	copy fasta	PROSER2	chr10	11818356	11877277
PROSER2_chr10_11818356_11877277	0/0	c0013	1308	1	1	0	0	0	0	copy fasta	PROSER2	chr10	11818356	11877277
PROSER2_chr10_11818356_11877277	0/0	c0014	1308	1	0	0	1	0	0	copy fasta	PROSER2	chr10	11818356	11877277
PROSER2_chr10_11818356_11877277	0/0	c0015	1308	1	0	0	0	0	1	copy fasta	PROSER2	chr10	11818356	11877277
PROSER2_chr10_11818356_11877277	0/0	c0016	1308	1	0	1	0	0	0	copy fasta	PROSER2	chr10	11818356	11877277
PROSER2_chr10_11818356_11877277	0/0	c0017	1308	1	0	0	0	0	1	copy fasta	PROSER2	chr10	11818356	11877277
PROSER2_chr10_11818356_11877277	0/0	c0018	1308	1	0	1	0	0	0	copy fasta	PROSER2	chr10	11818356	11877277
PROSER2_chr10_11818356_11877277	0/0	c0019	1308	1	1	0	0	0	0	copy fasta	PROSER2	chr10	11818356	11877277
PROSER2_chr10_11818356_11877277	0/0	c0020	1308	1	0	0	1	0	0	copy fasta	PROSER2	chr10	11818356	11877277
PROSER2_chr10_11818356_11877277	0/0	c0021	1308	1	0	0	0	0	1	copy fasta	PROSER2	chr10	11818356	11877277
PROSER2_chr10_11818356_11877277	0/0	c0022	1308	1	0	0	0	1	0	copy fasta	PROSER2	chr10	11818356	11877277
PROSER2_chr10_11818356_11877277	0/0	c0023	1308	1	1	0	0	0	0	copy fasta	PROSER2	chr10	11818356	11877277
PROSER2_chr10_11818356_11877277	0/0	c0024	1308	1	0	1	0	0	0	copy fasta	PROSER2	chr10	11818356	11877277
PROSER2_chr10_11818356_11877277	0/0	c0025	1308	1	0	0	1	0	0	copy fasta	PROSER2	chr10	11818356	11877277
PROSER2_chr10_11818356_11877277	0/0	c0026	1308	1	1	0	0	0	0	copy fasta	PROSER2	chr10	11818356	11877277
PROSER3_chr19_35753176_35776166	1/1	c0001	2175	262	50	57	105	11	37	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	c0002	2175	40	9	8	21	1	1	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	c0003	2175	32	7	9	8	3	5	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	c0004	2175	28	0	0	28	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	c0005	2175	16	8	3	4	0	1	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	c0006	2133	15	8	0	7	0	0	copy fasta	PROSER3	chr19	35753176	35776166