JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PROSER3_chr19_35753176_35776166	0/0	c0007	2175	3	3	0	0	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	c0008	2175	2	2	0	0	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	c0009	2175	2	0	0	0	0	2	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	c0010	2175	2	0	0	0	0	2	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	c0011	2175	2	2	0	0	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	c0012	2175	2	2	0	0	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	c0013	2175	2	0	0	2	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	c0014	2175	2	0	0	2	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	c0015	2175	1	1	0	0	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	c0016	2175	1	0	0	1	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	c0017	2175	1	1	0	0	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	c0018	2175	1	1	0	0	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	c0019	2175	1	1	0	0	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	c0020	2175	1	0	0	0	1	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	c0021	2175	1	1	0	0	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	c0022	2175	1	1	0	0	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	c0023	2175	1	0	0	1	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	c0024	2175	1	0	1	0	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	c0025	2175	1	1	0	0	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	c0026	2175	1	0	0	1	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	c0027	2175	1	0	0	1	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	c0028	2175	1	0	0	1	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROX1_chr1_213982973_214046510	1/1	c0001	2214	267	87	53	94	12	19	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	c0002	2214	3	1	2	0	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	c0003	2214	1	0	0	1	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	c0004	2214	1	0	0	0	0	1	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	c0005	2214	1	0	1	0	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	c0006	2214	1	0	0	1	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX2_chr14_74848033_74881145	1/1	c0001	1779	352	64	64	169	11	42	copy fasta	PROX2	chr14	74848033	74881145
PROX2_chr14_74848033_74881145	0/0	c0002	1779	10	8	2	0	0	0	copy fasta	PROX2	chr14	74848033	74881145
PROX2_chr14_74848033_74881145	0/0	c0003	1779	4	4	0	0	0	0	copy fasta	PROX2	chr14	74848033	74881145
PROX2_chr14_74848033_74881145	0/0	c0004	1779	3	3	0	0	0	0	copy fasta	PROX2	chr14	74848033	74881145
PROX2_chr14_74848033_74881145	0/0	c0005	1779	2	0	0	0	0	2	copy fasta	PROX2	chr14	74848033	74881145
PROX2_chr14_74848033_74881145	0/0	c0006	1779	2	0	0	2	0	0	copy fasta	PROX2	chr14	74848033	74881145
PROX2_chr14_74848033_74881145	0/0	c0007	1779	2	2	0	0	0	0	copy fasta	PROX2	chr14	74848033	74881145
PROX2_chr14_74848033_74881145	0/0	c0008	1779	1	0	0	1	0	0	copy fasta	PROX2	chr14	74848033	74881145
PROX2_chr14_74848033_74881145	0/0	c0009	1779	1	0	1	0	0	0	copy fasta	PROX2	chr14	74848033	74881145
PROX2_chr14_74848033_74881145	0/0	c0010	1779	1	0	0	0	0	1	copy fasta	PROX2	chr14	74848033	74881145
PROX2_chr14_74848033_74881145	0/0	c0011	1779	1	0	0	1	0	0	copy fasta	PROX2	chr14	74848033	74881145
PROX2_chr14_74848033_74881145	0/0	c0012	1779	1	0	1	0	0	0	copy fasta	PROX2	chr14	74848033	74881145
PROX2_chr14_74848033_74881145	0/0	c0013	1779	1	0	0	1	0	0	copy fasta	PROX2	chr14	74848033	74881145
PROX2_chr14_74848033_74881145	0/0	c0014	1779	1	0	0	0	1	0	copy fasta	PROX2	chr14	74848033	74881145
PROX2_chr14_74848033_74881145	0/0	c0015	1779	1	1	0	0	0	0	copy fasta	PROX2	chr14	74848033	74881145
PROX2_chr14_74848033_74881145	0/0	c0016	1779	1	0	0	0	0	1	copy fasta	PROX2	chr14	74848033	74881145
PROZ_chr13_113153648_113177386	0/1	c0001	1203	339	63	69	156	15	35	copy fasta	PROZ	chr13	113153648	113177386
PROZ_chr13_113153648_113177386	1/0	c0002	1203	18	16	1	0	0	0	copy fasta	PROZ	chr13	113153648	113177386
PROZ_chr13_113153648_113177386	0/0	c0003	1203	9	0	8	0	1	0	copy fasta	PROZ	chr13	113153648	113177386
PROZ_chr13_113153648_113177386	0/0	c0004	1203	3	3	0	0	0	0	copy fasta	PROZ	chr13	113153648	113177386
PROZ_chr13_113153648_113177386	0/0	c0005	1203	2	0	0	0	0	2	copy fasta	PROZ	chr13	113153648	113177386
PROZ_chr13_113153648_113177386	0/0	c0006	1203	1	1	0	0	0	0	copy fasta	PROZ	chr13	113153648	113177386