JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PROZ_chr13_113153648_113177386	0/0	c0007	1203	1	1	0	0	0	0	copy fasta	PROZ	chr13	113153648	113177386
PROZ_chr13_113153648_113177386	0/0	c0008	1203	1	1	0	0	0	0	copy fasta	PROZ	chr13	113153648	113177386
PROZ_chr13_113153648_113177386	0/0	c0009	1203	1	0	0	0	0	1	copy fasta	PROZ	chr13	113153648	113177386
PROZ_chr13_113153648_113177386	0/0	c0010	1203	1	1	0	0	0	0	copy fasta	PROZ	chr13	113153648	113177386
PROZ_chr13_113153648_113177386	0/0	c0011	1203	1	0	0	1	0	0	copy fasta	PROZ	chr13	113153648	113177386
PROZ_chr13_113153648_113177386	0/0	c0012	1203	1	0	0	1	0	0	copy fasta	PROZ	chr13	113153648	113177386
PRPF18_chr10_13581965_13635859	1/1	c0001	1029	242	31	34	144	8	23	copy fasta	PRPF18	chr10	13581965	13635859
PRPF18_chr10_13581965_13635859	0/0	c0002	1029	113	38	42	12	8	13	copy fasta	PRPF18	chr10	13581965	13635859
PRPF18_chr10_13581965_13635859	0/0	c0003	1029	22	11	0	8	0	3	copy fasta	PRPF18	chr10	13581965	13635859
PRPF18_chr10_13581965_13635859	0/0	c0004	1029	10	9	1	0	0	0	copy fasta	PRPF18	chr10	13581965	13635859
PRPF18_chr10_13581965_13635859	0/0	c0005	1029	1	1	0	0	0	0	copy fasta	PRPF18	chr10	13581965	13635859
PRPF18_chr10_13581965_13635859	0/0	c0006	1029	1	0	0	0	0	1	copy fasta	PRPF18	chr10	13581965	13635859
PRPF18_chr10_13581965_13635859	0/0	c0007	1029	1	0	1	0	0	0	copy fasta	PRPF18	chr10	13581965	13635859
PRPF19_chr11_60885547_60911585	1/0	c0001	1515	218	66	41	82	7	21	copy fasta	PRPF19	chr11	60885547	60911585
PRPF19_chr11_60885547_60911585	0/1	c0002	1515	114	11	20	60	7	15	copy fasta	PRPF19	chr11	60885547	60911585
PRPF19_chr11_60885547_60911585	0/0	c0003	1515	16	16	0	0	0	0	copy fasta	PRPF19	chr11	60885547	60911585
PRPF19_chr11_60885547_60911585	0/0	c0004	1515	1	1	0	0	0	0	copy fasta	PRPF19	chr11	60885547	60911585
PRPF19_chr11_60885547_60911585	0/0	c0005	1515	1	0	1	0	0	0	copy fasta	PRPF19	chr11	60885547	60911585
PRPF31_chr19_54110754_54136713	0/1	c0001	1500	209	61	38	77	4	28	copy fasta	PRPF31	chr19	54110754	54136713
PRPF31_chr19_54110754_54136713	0/0	c0002	1500	8	0	4	0	2	2	copy fasta	PRPF31	chr19	54110754	54136713
PRPF31_chr19_54110754_54136713	0/0	c0003	1500	2	0	0	2	0	0	copy fasta	PRPF31	chr19	54110754	54136713
PRPF31_chr19_54110754_54136713	0/0	c0004	1500	2	2	0	0	0	0	copy fasta	PRPF31	chr19	54110754	54136713
PRPF31_chr19_54110754_54136713	0/0	c0005	1500	1	0	0	1	0	0	copy fasta	PRPF31	chr19	54110754	54136713
PRPF31_chr19_54110754_54136713	0/0	c0006	1500	1	0	0	1	0	0	copy fasta	PRPF31	chr19	54110754	54136713
PRPF31_chr19_54110754_54136713	0/0	c0007	1500	1	1	0	0	0	0	copy fasta	PRPF31	chr19	54110754	54136713
PRPF31_chr19_54110754_54136713	0/0	c0008	1500	1	0	0	0	0	1	copy fasta	PRPF31	chr19	54110754	54136713
PRPF31_chr19_54110754_54136713	0/0	c0009	1500	1	0	0	0	0	1	copy fasta	PRPF31	chr19	54110754	54136713
PRPF31_chr19_54110754_54136713	0/0	c0010	1500	1	0	0	1	0	0	copy fasta	PRPF31	chr19	54110754	54136713
PRPF38A_chr1_52399602_52425836	1/1	c0001	939	305	96	40	131	8	28	copy fasta	PRPF38A	chr1	52399602	52425836
PRPF38A_chr1_52399602_52425836	0/0	c0002	939	2	2	0	0	0	0	copy fasta	PRPF38A	chr1	52399602	52425836
PRPF38A_chr1_52399602_52425836	0/0	c0003	939	1	0	0	1	0	0	copy fasta	PRPF38A	chr1	52399602	52425836
PRPF38B_chr1_108687310_108707928	1/1	c0001	1641	338	72	67	140	14	43	copy fasta	PRPF38B	chr1	108687310	108707928
PRPF38B_chr1_108687310_108707928	0/0	c0002	1641	7	7	0	0	0	0	copy fasta	PRPF38B	chr1	108687310	108707928
PRPF38B_chr1_108687310_108707928	0/0	c0003	1641	6	6	0	0	0	0	copy fasta	PRPF38B	chr1	108687310	108707928
PRPF38B_chr1_108687310_108707928	0/0	c0004	1641	5	0	1	0	2	2	copy fasta	PRPF38B	chr1	108687310	108707928
PRPF38B_chr1_108687310_108707928	0/0	c0005	1641	3	0	3	0	0	0	copy fasta	PRPF38B	chr1	108687310	108707928
PRPF38B_chr1_108687310_108707928	0/0	c0006	1641	1	0	0	0	0	1	copy fasta	PRPF38B	chr1	108687310	108707928
PRPF38B_chr1_108687310_108707928	0/0	c0007	1641	1	1	0	0	0	0	copy fasta	PRPF38B	chr1	108687310	108707928
PRPF38B_chr1_108687310_108707928	0/0	c0008	1641	1	0	1	0	0	0	copy fasta	PRPF38B	chr1	108687310	108707928
PRPF39_chr14_45079116_45121282	1/1	c0001	2010	239	87	34	87	15	14	copy fasta	PRPF39	chr14	45079116	45121282
PRPF39_chr14_45079116_45121282	0/0	c0002	2010	2	2	0	0	0	0	copy fasta	PRPF39	chr14	45079116	45121282
PRPF39_chr14_45079116_45121282	0/0	c0003	2010	1	1	0	0	0	0	copy fasta	PRPF39	chr14	45079116	45121282
PRPF39_chr14_45079116_45121282	0/0	c0004	2010	1	0	0	0	1	0	copy fasta	PRPF39	chr14	45079116	45121282
PRPF39_chr14_45079116_45121282	0/0	c0005	2010	1	0	0	1	0	0	copy fasta	PRPF39	chr14	45079116	45121282
PRPF3_chr1_150316533_150358233	1/1	c0001	2052	332	65	58	151	13	43	copy fasta	PRPF3	chr1	150316533	150358233
PRPF3_chr1_150316533_150358233	0/0	c0002	2052	15	14	1	0	0	0	copy fasta	PRPF3	chr1	150316533	150358233
PRPF3_chr1_150316533_150358233	0/0	c0003	2052	11	11	0	0	0	0	copy fasta	PRPF3	chr1	150316533	150358233
PRPF3_chr1_150316533_150358233	0/0	c0004	2052	1	0	0	0	0	1	copy fasta	PRPF3	chr1	150316533	150358233
PRPF3_chr1_150316533_150358233	0/0	c0005	2052	1	0	1	0	0	0	copy fasta	PRPF3	chr1	150316533	150358233
PRPF3_chr1_150316533_150358233	0/0	c0006	2052	1	0	0	1	0	0	copy fasta	PRPF3	chr1	150316533	150358233