JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRPF3_chr1_150316533_150358233	0/0	c0007	2052	1	0	0	0	1	0	copy fasta	PRPF3	chr1	150316533	150358233
PRPF40A_chr2_152646732_152722461	1/0	c0001	2919	277	83	67	76	13	37	copy fasta	PRPF40A	chr2	152646732	152722461
PRPF40A_chr2_152646732_152722461	0/1	c0002	2919	82	3	6	63	2	7	copy fasta	PRPF40A	chr2	152646732	152722461
PRPF40A_chr2_152646732_152722461	0/0	c0003	2919	5	5	0	0	0	0	copy fasta	PRPF40A	chr2	152646732	152722461
PRPF40A_chr2_152646732_152722461	0/0	c0004	2919	2	0	0	2	0	0	copy fasta	PRPF40A	chr2	152646732	152722461
PRPF40A_chr2_152646732_152722461	0/0	c0005	2919	1	1	0	0	0	0	copy fasta	PRPF40A	chr2	152646732	152722461
PRPF40A_chr2_152646732_152722461	0/0	c0006	2919	1	0	0	1	0	0	copy fasta	PRPF40A	chr2	152646732	152722461
PRPF40A_chr2_152646732_152722461	0/0	c0007	2919	1	1	0	0	0	0	copy fasta	PRPF40A	chr2	152646732	152722461
PRPF40A_chr2_152646732_152722461	0/0	c0008	2919	1	1	0	0	0	0	copy fasta	PRPF40A	chr2	152646732	152722461
PRPF40A_chr2_152646732_152722461	0/0	c0009	2919	1	0	0	0	1	0	copy fasta	PRPF40A	chr2	152646732	152722461
PRPF40A_chr2_152646732_152722461	0/0	c0010	2919	1	0	1	0	0	0	copy fasta	PRPF40A	chr2	152646732	152722461
PRPF40B_chr12_49618561_49649665	1/1	c0001	2679	172	83	34	36	7	10	copy fasta	PRPF40B	chr12	49618561	49649665
PRPF40B_chr12_49618561_49649665	0/0	c0002	2679	15	0	2	12	1	0	copy fasta	PRPF40B	chr12	49618561	49649665
PRPF40B_chr12_49618561_49649665	0/0	c0003	2679	2	0	2	0	0	0	copy fasta	PRPF40B	chr12	49618561	49649665
PRPF40B_chr12_49618561_49649665	0/0	c0004	2679	1	0	0	1	0	0	copy fasta	PRPF40B	chr12	49618561	49649665
PRPF40B_chr12_49618561_49649665	0/0	c0005	2679	1	1	0	0	0	0	copy fasta	PRPF40B	chr12	49618561	49649665
PRPF40B_chr12_49618561_49649665	0/0	c0006	2679	1	1	0	0	0	0	copy fasta	PRPF40B	chr12	49618561	49649665
PRPF40B_chr12_49618561_49649665	0/0	c0007	2679	1	1	0	0	0	0	copy fasta	PRPF40B	chr12	49618561	49649665
PRPF40B_chr12_49618561_49649665	0/0	c0008	2679	1	0	0	1	0	0	copy fasta	PRPF40B	chr12	49618561	49649665
PRPF4B_chr6_4016300_4069983	0/1	c0001	3024	239	46	48	104	13	27	copy fasta	PRPF4B	chr6	4016300	4069983
PRPF4B_chr6_4016300_4069983	1/0	c0002	3024	91	14	19	45	4	8	copy fasta	PRPF4B	chr6	4016300	4069983
PRPF4B_chr6_4016300_4069983	0/0	c0003	3024	13	10	2	0	1	0	copy fasta	PRPF4B	chr6	4016300	4069983
PRPF4B_chr6_4016300_4069983	0/0	c0004	3024	6	6	0	0	0	0	copy fasta	PRPF4B	chr6	4016300	4069983
PRPF4B_chr6_4016300_4069983	0/0	c0005	3024	5	5	0	0	0	0	copy fasta	PRPF4B	chr6	4016300	4069983
PRPF4B_chr6_4016300_4069983	0/0	c0006	3024	3	0	0	0	0	3	copy fasta	PRPF4B	chr6	4016300	4069983
PRPF4B_chr6_4016300_4069983	0/0	c0007	3024	3	3	0	0	0	0	copy fasta	PRPF4B	chr6	4016300	4069983
PRPF4B_chr6_4016300_4069983	0/0	c0008	3024	1	0	1	0	0	0	copy fasta	PRPF4B	chr6	4016300	4069983
PRPF4B_chr6_4016300_4069983	0/0	c0009	3024	1	1	0	0	0	0	copy fasta	PRPF4B	chr6	4016300	4069983
PRPF4B_chr6_4016300_4069983	0/0	c0010	3024	1	0	0	1	0	0	copy fasta	PRPF4B	chr6	4016300	4069983
PRPF4B_chr6_4016300_4069983	0/0	c0011	3024	1	0	0	0	0	1	copy fasta	PRPF4B	chr6	4016300	4069983
PRPF4B_chr6_4016300_4069983	0/0	c0012	3024	1	0	0	0	0	1	copy fasta	PRPF4B	chr6	4016300	4069983
PRPF4B_chr6_4016300_4069983	0/0	c0013	3024	1	1	0	0	0	0	copy fasta	PRPF4B	chr6	4016300	4069983
PRPF4B_chr6_4016300_4069983	0/0	c0014	3024	1	0	1	0	0	0	copy fasta	PRPF4B	chr6	4016300	4069983
PRPF4B_chr6_4016300_4069983	0/0	c0015	3024	1	0	1	0	0	0	copy fasta	PRPF4B	chr6	4016300	4069983
PRPF4_chr9_113270658_113297905	1/1	c0001	1566	254	51	62	108	11	20	copy fasta	PRPF4	chr9	113270658	113297905
PRPF4_chr9_113270658_113297905	0/0	c0002	1566	170	39	14	90	3	24	copy fasta	PRPF4	chr9	113270658	113297905
PRPF4_chr9_113270658_113297905	0/0	c0003	1566	1	0	0	1	0	0	copy fasta	PRPF4	chr9	113270658	113297905
PRPF4_chr9_113270658_113297905	0/0	c0004	1566	1	0	0	1	0	0	copy fasta	PRPF4	chr9	113270658	113297905
PRPF6_chr20_63976132_64038100	1/1	c0001	2826	276	76	60	80	14	44	copy fasta	PRPF6	chr20	63976132	64038100
PRPF6_chr20_63976132_64038100	0/0	c0002	2826	7	3	4	0	0	0	copy fasta	PRPF6	chr20	63976132	64038100
PRPF6_chr20_63976132_64038100	0/0	c0003	2826	2	0	2	0	0	0	copy fasta	PRPF6	chr20	63976132	64038100
PRPF6_chr20_63976132_64038100	0/0	c0004	2826	2	2	0	0	0	0	copy fasta	PRPF6	chr20	63976132	64038100
PRPF6_chr20_63976132_64038100	0/0	c0005	2826	2	0	0	2	0	0	copy fasta	PRPF6	chr20	63976132	64038100
PRPF6_chr20_63976132_64038100	0/0	c0006	2826	1	0	1	0	0	0	copy fasta	PRPF6	chr20	63976132	64038100
PRPF6_chr20_63976132_64038100	0/0	c0007	2826	1	0	1	0	0	0	copy fasta	PRPF6	chr20	63976132	64038100
PRPF6_chr20_63976132_64038100	0/0	c0008	2826	1	1	0	0	0	0	copy fasta	PRPF6	chr20	63976132	64038100
PRPF6_chr20_63976132_64038100	0/0	c0009	2826	1	0	0	1	0	0	copy fasta	PRPF6	chr20	63976132	64038100
PRPF6_chr20_63976132_64038100	0/0	c0010	2826	1	0	0	1	0	0	copy fasta	PRPF6	chr20	63976132	64038100
PRPF8_chr17_1645629_1689867	0/1	c0001	7008	180	30	34	81	9	25	copy fasta	PRPF8	chr17	1645629	1689867
PRPF8_chr17_1645629_1689867	0/0	c0002	7008	61	41	2	11	0	7	copy fasta	PRPF8	chr17	1645629	1689867