JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRPF8_chr17_1645629_1689867	0/0	c0003	7008	9	0	0	9	0	0	copy fasta	PRPF8	chr17	1645629	1689867
PRPF8_chr17_1645629_1689867	0/0	c0004	7008	8	8	0	0	0	0	copy fasta	PRPF8	chr17	1645629	1689867
PRPF8_chr17_1645629_1689867	0/0	c0005	7008	6	0	0	0	3	3	copy fasta	PRPF8	chr17	1645629	1689867
PRPF8_chr17_1645629_1689867	0/0	c0006	7008	4	0	2	0	0	2	copy fasta	PRPF8	chr17	1645629	1689867
PRPF8_chr17_1645629_1689867	0/0	c0007	7008	3	3	0	0	0	0	copy fasta	PRPF8	chr17	1645629	1689867
PRPF8_chr17_1645629_1689867	0/0	c0008	7008	3	3	0	0	0	0	copy fasta	PRPF8	chr17	1645629	1689867
PRPF8_chr17_1645629_1689867	0/0	c0009	7008	3	2	0	0	0	1	copy fasta	PRPF8	chr17	1645629	1689867
PRPF8_chr17_1645629_1689867	0/0	c0010	7008	2	2	0	0	0	0	copy fasta	PRPF8	chr17	1645629	1689867
PRPF8_chr17_1645629_1689867	0/0	c0011	7008	1	1	0	0	0	0	copy fasta	PRPF8	chr17	1645629	1689867
PRPF8_chr17_1645629_1689867	0/0	c0012	7008	1	1	0	0	0	0	copy fasta	PRPF8	chr17	1645629	1689867
PRPF8_chr17_1645629_1689867	0/0	c0013	7008	1	1	0	0	0	0	copy fasta	PRPF8	chr17	1645629	1689867
PRPF8_chr17_1645629_1689867	0/0	c0014	7008	1	1	0	0	0	0	copy fasta	PRPF8	chr17	1645629	1689867
PRPF8_chr17_1645629_1689867	0/0	c0015	7008	1	0	0	1	0	0	copy fasta	PRPF8	chr17	1645629	1689867
PRPF8_chr17_1645629_1689867	0/0	c0016	7008	1	0	0	1	0	0	copy fasta	PRPF8	chr17	1645629	1689867
PRPF8_chr17_1645629_1689867	0/0	c0017	7008	1	0	1	0	0	0	copy fasta	PRPF8	chr17	1645629	1689867
PRPF8_chr17_1645629_1689867	0/0	c0018	7008	1	0	0	1	0	0	copy fasta	PRPF8	chr17	1645629	1689867
PRPF8_chr17_1645629_1689867	0/0	c0019	7008	1	1	0	0	0	0	copy fasta	PRPF8	chr17	1645629	1689867
PRPF8_chr17_1645629_1689867	0/0	c0020	7008	1	0	0	1	0	0	copy fasta	PRPF8	chr17	1645629	1689867
PRPF8_chr17_1645629_1689867	0/0	c0021	7008	1	0	1	0	0	0	copy fasta	PRPF8	chr17	1645629	1689867
PRPF8_chr17_1645629_1689867	0/0	c0022	7008	1	0	0	1	0	0	copy fasta	PRPF8	chr17	1645629	1689867
PRPH2_chr6_42691598_42727597	0/1	c0001	1041	196	56	42	75	3	19	copy fasta	PRPH2	chr6	42691598	42727597
PRPH2_chr6_42691598_42727597	0/0	c0002	1041	103	14	9	61	6	13	copy fasta	PRPH2	chr6	42691598	42727597
PRPH2_chr6_42691598_42727597	0/0	c0003	1041	58	12	15	26	1	4	copy fasta	PRPH2	chr6	42691598	42727597
PRPH2_chr6_42691598_42727597	0/0	c0004	1041	14	9	0	4	0	1	copy fasta	PRPH2	chr6	42691598	42727597
PRPH2_chr6_42691598_42727597	1/0	c0005	1041	10	0	5	0	1	3	copy fasta	PRPH2	chr6	42691598	42727597
PRPH2_chr6_42691598_42727597	0/0	c0006	1041	4	0	0	4	0	0	copy fasta	PRPH2	chr6	42691598	42727597
PRPH2_chr6_42691598_42727597	0/0	c0007	1041	2	0	1	0	1	0	copy fasta	PRPH2	chr6	42691598	42727597
PRPH2_chr6_42691598_42727597	0/0	c0008	1041	2	2	0	0	0	0	copy fasta	PRPH2	chr6	42691598	42727597
PRPH2_chr6_42691598_42727597	0/0	c0009	1041	1	1	0	0	0	0	copy fasta	PRPH2	chr6	42691598	42727597
PRPH2_chr6_42691598_42727597	0/0	c0010	1041	1	0	0	1	0	0	copy fasta	PRPH2	chr6	42691598	42727597
PRPH2_chr6_42691598_42727597	0/0	c0011	1041	1	0	0	1	0	0	copy fasta	PRPH2	chr6	42691598	42727597
PRPH_chr12_49290147_49303686	1/1	c0001	1413	306	51	58	140	12	43	copy fasta	PRPH	chr12	49290147	49303686
PRPH_chr12_49290147_49303686	0/0	c0002	1413	53	37	9	0	4	3	copy fasta	PRPH	chr12	49290147	49303686
PRPH_chr12_49290147_49303686	0/0	c0003	1413	6	0	0	4	1	1	copy fasta	PRPH	chr12	49290147	49303686
PRPH_chr12_49290147_49303686	0/0	c0004	1413	5	1	1	2	1	0	copy fasta	PRPH	chr12	49290147	49303686
PRPH_chr12_49290147_49303686	0/0	c0005	1413	4	3	0	0	0	1	copy fasta	PRPH	chr12	49290147	49303686
PRPH_chr12_49290147_49303686	0/0	c0006	1413	2	0	0	2	0	0	copy fasta	PRPH	chr12	49290147	49303686
PRPH_chr12_49290147_49303686	0/0	c0007	1413	1	1	0	0	0	0	copy fasta	PRPH	chr12	49290147	49303686
PRPH_chr12_49290147_49303686	0/0	c0008	1413	1	0	0	1	0	0	copy fasta	PRPH	chr12	49290147	49303686
PRPH_chr12_49290147_49303686	0/0	c0009	1413	1	0	0	1	0	0	copy fasta	PRPH	chr12	49290147	49303686
PRPH_chr12_49290147_49303686	0/0	c0010	1413	1	0	0	1	0	0	copy fasta	PRPH	chr12	49290147	49303686
PRPH_chr12_49290147_49303686	0/0	c0011	1413	1	1	0	0	0	0	copy fasta	PRPH	chr12	49290147	49303686
PRPH_chr12_49290147_49303686	0/0	c0012	1413	1	0	0	1	0	0	copy fasta	PRPH	chr12	49290147	49303686
PRPS1L1_chr7_18021770_18032846	1/1	c0001	957	306	72	48	140	12	32	copy fasta	PRPS1L1	chr7	18021770	18032846
PRPS1L1_chr7_18021770_18032846	0/0	c0002	957	103	8	33	42	4	16	copy fasta	PRPS1L1	chr7	18021770	18032846
PRPS1L1_chr7_18021770_18032846	0/0	c0003	957	39	0	2	37	0	0	copy fasta	PRPS1L1	chr7	18021770	18032846
PRPS1L1_chr7_18021770_18032846	0/0	c0004	957	6	5	1	0	0	0	copy fasta	PRPS1L1	chr7	18021770	18032846
PRPS1L1_chr7_18021770_18032846	0/0	c0005	957	3	1	0	0	0	2	copy fasta	PRPS1L1	chr7	18021770	18032846
PRPS1L1_chr7_18021770_18032846	0/0	c0006	957	1	0	0	1	0	0	copy fasta	PRPS1L1	chr7	18021770	18032846
PRPS1L1_chr7_18021770_18032846	0/0	c0007	957	1	1	0	0	0	0	copy fasta	PRPS1L1	chr7	18021770	18032846