JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRPS1L1_chr7_18021770_18032846	0/0	c0008	957	1	1	0	0	0	0	copy fasta	PRPS1L1	chr7	18021770	18032846
PRPS1L1_chr7_18021770_18032846	0/0	c0009	957	1	1	0	0	0	0	copy fasta	PRPS1L1	chr7	18021770	18032846
PRPS1L1_chr7_18021770_18032846	0/0	c0010	957	1	1	0	0	0	0	copy fasta	PRPS1L1	chr7	18021770	18032846
PRPS1_chrX_107623510_107656026	1/1	c0001	957	241	74	38	95	11	21	copy fasta	PRPS1	chrX	107623510	107656026
PRPS1_chrX_107623510_107656026	0/0	c0002	957	2	0	0	0	0	2	copy fasta	PRPS1	chrX	107623510	107656026
PRPS1_chrX_107623510_107656026	0/0	c0003	957	1	0	0	1	0	0	copy fasta	PRPS1	chrX	107623510	107656026
PRPS1_chrX_107623510_107656026	0/0	c0004	956	1	0	0	1	0	0	copy fasta	PRPS1	chrX	107623510	107656026
PRPS2_chrX_12786412_12829222	0/1	c0001	957	207	30	34	119	7	16	copy fasta	PRPS2	chrX	12786412	12829222
PRPS2_chrX_12786412_12829222	1/0	c0002	957	125	48	25	31	2	18	copy fasta	PRPS2	chrX	12786412	12829222
PRPS2_chrX_12786412_12829222	0/0	c0003	957	1	0	0	1	0	0	copy fasta	PRPS2	chrX	12786412	12829222
PRPS2_chrX_12786412_12829222	0/0	c0004	957	1	0	1	0	0	0	copy fasta	PRPS2	chrX	12786412	12829222
PRPSAP1_chr17_76304478_76358916	1/1	c0001	1158	249	68	49	78	13	39	copy fasta	PRPSAP1	chr17	76304478	76358916
PRPSAP1_chr17_76304478_76358916	0/0	c0002	1158	116	23	17	68	3	5	copy fasta	PRPSAP1	chr17	76304478	76358916
PRPSAP1_chr17_76304478_76358916	0/0	c0003	1147	1	1	0	0	0	0	copy fasta	PRPSAP1	chr17	76304478	76358916
PRPSAP2_chr17_18853131_18936287	1/1	c0001	1110	214	42	34	107	6	23	copy fasta	PRPSAP2	chr17	18853131	18936287
PRPSAP2_chr17_18853131_18936287	0/0	c0002	1110	168	42	45	56	6	19	copy fasta	PRPSAP2	chr17	18853131	18936287
PRPSAP2_chr17_18853131_18936287	0/0	c0003	1110	8	7	1	0	0	0	copy fasta	PRPSAP2	chr17	18853131	18936287
PRPSAP2_chr17_18853131_18936287	0/0	c0004	1110	1	1	0	0	0	0	copy fasta	PRPSAP2	chr17	18853131	18936287
PRPSAP2_chr17_18853131_18936287	0/0	c0005	1110	1	0	0	1	0	0	copy fasta	PRPSAP2	chr17	18853131	18936287
PRR11_chr17_59150746_59211709	1/1	c0001	1083	282	72	58	108	10	32	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	c0002	1083	3	2	1	0	0	0	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	c0003	1083	1	1	0	0	0	0	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	c0004	1083	1	1	0	0	0	0	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	c0005	1083	1	0	0	0	0	1	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	c0006	1083	1	0	1	0	0	0	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	c0007	1083	1	0	0	0	0	1	copy fasta	PRR11	chr17	59150746	59211709
PRR12_chr19_49586182_49631439	1/0	c0001	6111	147	27	32	58	8	21	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	c0002	6111	57	23	10	24	0	0	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/1	c0003	6111	32	8	4	8	3	8	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	c0004	6111	8	1	3	0	0	4	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	c0005	6112	7	1	3	3	0	0	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	c0006	6111	4	3	1	0	0	0	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	c0007	6111	4	0	1	0	0	3	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	c0008	6111	4	0	0	4	0	0	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	c0009	6111	3	3	0	0	0	0	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	c0010	6111	2	0	2	0	0	0	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	c0011	6112	2	1	1	0	0	0	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	c0012	6111	2	2	0	0	0	0	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	c0013	6111	2	2	0	0	0	0	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	c0014	6111	2	0	1	0	0	1	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	c0015	6111	2	2	0	0	0	0	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	c0016	6111	2	2	0	0	0	0	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	c0017	6111	2	1	1	0	0	0	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	c0018	6111	2	0	1	0	1	0	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	c0019	6111	2	2	0	0	0	0	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	c0020	6111	2	2	0	0	0	0	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	c0021	6111	1	1	0	0	0	0	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	c0022	6111	1	1	0	0	0	0	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	c0023	6111	1	1	0	0	0	0	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	c0024	6111	1	0	1	0	0	0	copy fasta	PRR12	chr19	49586182	49631439