JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRR12_chr19_49586182_49631439	0/0	c0025	6111	1	1	0	0	0	0	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	c0026	6111	1	1	0	0	0	0	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	c0027	6111	1	0	0	0	0	1	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	c0028	6111	1	0	0	1	0	0	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	c0029	6111	1	0	0	1	0	0	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	c0030	6111	1	1	0	0	0	0	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	c0031	6111	1	1	0	0	0	0	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	c0032	6111	1	0	0	0	0	1	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	c0033	6111	1	1	0	0	0	0	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	c0034	6111	1	0	1	0	0	0	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	c0035	6111	1	0	0	0	0	1	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	c0036	6111	1	0	0	1	0	0	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	c0037	6111	1	0	0	0	0	1	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	c0038	6111	1	0	0	1	0	0	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	c0039	6111	1	0	0	1	0	0	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	c0040	6111	1	0	0	1	0	0	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	c0041	6111	1	0	0	0	0	1	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	c0042	6111	1	0	0	1	0	0	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	c0043	6111	1	0	0	0	0	1	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	c0044	6111	1	0	0	1	0	0	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	c0045	6111	1	1	0	0	0	0	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	c0046	6111	1	0	0	1	0	0	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	c0047	6111	1	0	1	0	0	0	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	c0048	6111	1	0	0	0	0	1	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	c0049	6111	1	0	1	0	0	0	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	c0050	6111	1	0	0	0	0	1	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	c0051	6111	1	0	0	1	0	0	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	c0052	6111	1	0	0	0	0	1	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	c0053	6111	1	1	0	0	0	0	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	c0054	6111	1	0	0	1	0	0	copy fasta	PRR12	chr19	49586182	49631439
PRR13_chr12_53436734_53451638	1/1	c0001	447	385	89	70	162	16	46	copy fasta	PRR13	chr12	53436734	53451638
PRR13_chr12_53436734_53451638	0/0	c0002	447	1	0	0	1	0	0	copy fasta	PRR13	chr12	53436734	53451638
PRR13_chr12_53436734_53451638	0/0	c0003	447	1	1	0	0	0	0	copy fasta	PRR13	chr12	53436734	53451638
PRR13_chr12_53436734_53451638	0/0	c0004	447	1	0	0	1	0	0	copy fasta	PRR13	chr12	53436734	53451638
PRR14L_chr22_31676347_31755132	1/0	c0001	6456	138	13	27	67	10	20	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/1	c0002	6456	41	10	6	16	1	7	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	c0003	6456	12	0	5	6	0	1	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	c0004	6456	11	4	6	1	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	c0005	6456	10	0	0	10	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	c0006	6456	10	8	2	0	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	c0007	6456	10	5	2	0	0	3	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	c0008	6456	7	7	0	0	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	c0009	6456	6	5	1	0	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	c0010	6456	5	4	1	0	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	c0011	6456	4	4	0	0	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	c0012	6456	4	2	0	0	2	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	c0013	6456	3	0	0	2	0	1	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	c0014	6456	3	0	0	3	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	c0015	6456	3	0	0	3	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	c0016	6456	3	3	0	0	0	0	copy fasta	PRR14L	chr22	31676347	31755132