JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRR14L_chr22_31676347_31755132	0/0	c0017	6456	3	3	0	0	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	c0018	6456	3	3	0	0	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	c0019	6456	3	3	0	0	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	c0020	6456	3	2	0	0	0	1	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	c0021	6456	3	0	2	0	0	1	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	c0022	6456	2	0	0	2	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	c0023	6456	2	0	0	0	0	2	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	c0024	6456	2	0	2	0	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	c0025	6456	2	0	0	0	0	2	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	c0026	6456	2	2	0	0	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	c0027	6456	2	0	0	2	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	c0028	6456	1	1	0	0	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	c0029	6456	1	1	0	0	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	c0030	6456	1	0	0	1	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	c0031	6456	1	0	1	0	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	c0032	6456	1	0	0	0	1	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	c0033	6456	1	1	0	0	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	c0034	6456	1	0	0	0	0	1	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	c0035	6456	1	0	0	0	0	1	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	c0036	6456	1	0	0	0	0	1	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	c0037	6456	1	0	0	1	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	c0038	6456	1	1	0	0	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	c0039	6456	1	0	0	1	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	c0040	6456	1	0	0	1	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	c0041	6456	1	0	0	0	0	1	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	c0042	6456	1	1	0	0	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	c0043	6456	1	1	0	0	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	c0044	6456	1	1	0	0	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	c0045	6456	1	0	1	0	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	c0046	6456	1	1	0	0	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14_chr16_30645960_30661413	1/1	c0001	1758	173	31	47	78	10	5	copy fasta	PRR14	chr16	30645960	30661413
PRR14_chr16_30645960_30661413	0/0	c0002	1758	92	31	15	21	4	21	copy fasta	PRR14	chr16	30645960	30661413
PRR14_chr16_30645960_30661413	0/0	c0003	1758	7	6	1	0	0	0	copy fasta	PRR14	chr16	30645960	30661413
PRR14_chr16_30645960_30661413	0/0	c0004	1758	5	5	0	0	0	0	copy fasta	PRR14	chr16	30645960	30661413
PRR14_chr16_30645960_30661413	0/0	c0005	1759	4	0	0	2	0	2	copy fasta	PRR14	chr16	30645960	30661413
PRR14_chr16_30645960_30661413	0/0	c0006	1758	4	4	0	0	0	0	copy fasta	PRR14	chr16	30645960	30661413
PRR14_chr16_30645960_30661413	0/0	c0007	1759	3	0	1	2	0	0	copy fasta	PRR14	chr16	30645960	30661413
PRR14_chr16_30645960_30661413	0/0	c0008	1758	1	1	0	0	0	0	copy fasta	PRR14	chr16	30645960	30661413
PRR14_chr16_30645960_30661413	0/0	c0009	1759	1	1	0	0	0	0	copy fasta	PRR14	chr16	30645960	30661413
PRR14_chr16_30645960_30661413	0/0	c0010	1758	1	1	0	0	0	0	copy fasta	PRR14	chr16	30645960	30661413
PRR14_chr16_30645960_30661413	0/0	c0011	1759	1	1	0	0	0	0	copy fasta	PRR14	chr16	30645960	30661413
PRR14_chr16_30645960_30661413	0/0	c0012	1758	1	1	0	0	0	0	copy fasta	PRR14	chr16	30645960	30661413
PRR14_chr16_30645960_30661413	0/0	c0013	1758	1	1	0	0	0	0	copy fasta	PRR14	chr16	30645960	30661413
PRR14_chr16_30645960_30661413	0/0	c0014	1758	1	1	0	0	0	0	copy fasta	PRR14	chr16	30645960	30661413
PRR14_chr16_30645960_30661413	0/0	c0015	1758	1	0	0	1	0	0	copy fasta	PRR14	chr16	30645960	30661413
PRR15L_chr17_47946967_47962883	1/1	c0001	312	393	91	79	161	18	42	copy fasta	PRR15L	chr17	47946967	47962883
PRR15L_chr17_47946967_47962883	0/0	c0002	312	4	3	1	0	0	0	copy fasta	PRR15L	chr17	47946967	47962883
PRR15L_chr17_47946967_47962883	0/0	c0003	312	1	0	0	1	0	0	copy fasta	PRR15L	chr17	47946967	47962883
PRR15_chr7_29558835_29572293	0/1	c0001	390	197	50	30	89	4	23	copy fasta	PRR15	chr7	29558835	29572293
PRR15_chr7_29558835_29572293	0/0	c0002	390	131	21	30	60	9	11	copy fasta	PRR15	chr7	29558835	29572293