JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ARSL_chrX_2929521_2969341	0/0	c0012	1770	2	0	2	0	0	0	copy fasta	ARSL	chrX	2929521	2969341
ARSL_chrX_2929521_2969341	0/0	c0013	1770	2	2	0	0	0	0	copy fasta	ARSL	chrX	2929521	2969341
ARSL_chrX_2929521_2969341	0/0	c0014	1770	1	0	0	1	0	0	copy fasta	ARSL	chrX	2929521	2969341
ARSL_chrX_2929521_2969341	0/0	c0015	1771	1	0	0	1	0	0	copy fasta	ARSL	chrX	2929521	2969341
ARSL_chrX_2929521_2969341	0/0	c0016	1770	1	0	1	0	0	0	copy fasta	ARSL	chrX	2929521	2969341
ARSL_chrX_2929521_2969341	0/0	c0017	1771	1	0	0	1	0	0	copy fasta	ARSL	chrX	2929521	2969341
ARSL_chrX_2929521_2969341	0/0	c0018	1771	1	0	1	0	0	0	copy fasta	ARSL	chrX	2929521	2969341
ARSL_chrX_2929521_2969341	0/0	c0019	1770	1	0	0	1	0	0	copy fasta	ARSL	chrX	2929521	2969341
ARSL_chrX_2929521_2969341	0/0	c0020	1771	1	0	0	1	0	0	copy fasta	ARSL	chrX	2929521	2969341
ARSL_chrX_2929521_2969341	0/0	c0021	1770	1	0	0	0	1	0	copy fasta	ARSL	chrX	2929521	2969341
ARSL_chrX_2929521_2969341	0/0	c0022	1770	1	0	0	1	0	0	copy fasta	ARSL	chrX	2929521	2969341
ARSL_chrX_2929521_2969341	0/0	c0023	1770	1	1	0	0	0	0	copy fasta	ARSL	chrX	2929521	2969341
ARSL_chrX_2929521_2969341	0/0	c0024	1769	1	1	0	0	0	0	copy fasta	ARSL	chrX	2929521	2969341
ARSL_chrX_2929521_2969341	0/0	c0025	1770	1	0	0	1	0	0	copy fasta	ARSL	chrX	2929521	2969341
ARSL_chrX_2929521_2969341	0/0	c0026	1770	1	1	0	0	0	0	copy fasta	ARSL	chrX	2929521	2969341
ART1_chr11_3640128_3669416	1/0	c0001	984	190	44	9	117	4	15	copy fasta	ART1	chr11	3640128	3669416
ART1_chr11_3640128_3669416	0/1	c0002	984	124	8	42	45	9	19	copy fasta	ART1	chr11	3640128	3669416
ART1_chr11_3640128_3669416	0/0	c0003	984	43	20	3	17	0	3	copy fasta	ART1	chr11	3640128	3669416
ART1_chr11_3640128_3669416	0/0	c0004	984	9	8	0	0	0	1	copy fasta	ART1	chr11	3640128	3669416
ART1_chr11_3640128_3669416	0/0	c0005	984	9	0	7	0	2	0	copy fasta	ART1	chr11	3640128	3669416
ART1_chr11_3640128_3669416	0/0	c0006	984	8	0	1	7	0	0	copy fasta	ART1	chr11	3640128	3669416
ART1_chr11_3640128_3669416	0/0	c0007	984	3	3	0	0	0	0	copy fasta	ART1	chr11	3640128	3669416
ART1_chr11_3640128_3669416	0/0	c0008	984	2	1	1	0	0	0	copy fasta	ART1	chr11	3640128	3669416
ART1_chr11_3640128_3669416	0/0	c0009	984	1	1	0	0	0	0	copy fasta	ART1	chr11	3640128	3669416
ART1_chr11_3640128_3669416	0/0	c0010	984	1	0	1	0	0	0	copy fasta	ART1	chr11	3640128	3669416
ART1_chr11_3640128_3669416	0/0	c0011	984	1	1	0	0	0	0	copy fasta	ART1	chr11	3640128	3669416
ART1_chr11_3640128_3669416	0/0	c0012	984	1	0	0	0	1	0	copy fasta	ART1	chr11	3640128	3669416
ART1_chr11_3640128_3669416	0/0	c0013	984	1	1	0	0	0	0	copy fasta	ART1	chr11	3640128	3669416
ART1_chr11_3640128_3669416	0/0	c0014	984	1	1	0	0	0	0	copy fasta	ART1	chr11	3640128	3669416
ART3_chr4_76069709_76117786	0/0	c0001	1170	207	47	28	110	5	17	copy fasta	ART3	chr4	76069709	76117786
ART3_chr4_76069709_76117786	1/1	c0002	1170	163	29	35	63	11	23	copy fasta	ART3	chr4	76069709	76117786
ART3_chr4_76069709_76117786	0/0	c0003	1170	13	12	1	0	0	0	copy fasta	ART3	chr4	76069709	76117786
ART3_chr4_76069709_76117786	0/0	c0004	1170	3	0	0	3	0	0	copy fasta	ART3	chr4	76069709	76117786
ART3_chr4_76069709_76117786	0/0	c0005	1170	2	2	0	0	0	0	copy fasta	ART3	chr4	76069709	76117786
ART3_chr4_76069709_76117786	0/0	c0006	1170	2	2	0	0	0	0	copy fasta	ART3	chr4	76069709	76117786
ART3_chr4_76069709_76117786	0/0	c0007	1170	1	1	0	0	0	0	copy fasta	ART3	chr4	76069709	76117786
ART3_chr4_76069709_76117786	0/0	c0008	1170	1	1	0	0	0	0	copy fasta	ART3	chr4	76069709	76117786
ART4_chr12_14820569_14848526	1/1	c0001	945	226	52	28	104	9	31	copy fasta	ART4	chr12	14820569	14848526
ART4_chr12_14820569_14848526	0/0	c0002	945	70	15	20	24	5	6	copy fasta	ART4	chr12	14820569	14848526
ART4_chr12_14820569_14848526	0/0	c0003	945	48	12	15	15	1	5	copy fasta	ART4	chr12	14820569	14848526
ART4_chr12_14820569_14848526	0/0	c0004	945	14	1	4	3	2	4	copy fasta	ART4	chr12	14820569	14848526
ART4_chr12_14820569_14848526	0/0	c0005	945	6	0	4	0	0	2	copy fasta	ART4	chr12	14820569	14848526
ART4_chr12_14820569_14848526	0/0	c0006	945	6	5	1	0	0	0	copy fasta	ART4	chr12	14820569	14848526
ART4_chr12_14820569_14848526	0/0	c0007	945	3	3	0	0	0	0	copy fasta	ART4	chr12	14820569	14848526
ART4_chr12_14820569_14848526	0/0	c0008	945	2	2	0	0	0	0	copy fasta	ART4	chr12	14820569	14848526
ART4_chr12_14820569_14848526	0/0	c0009	945	1	0	0	1	0	0	copy fasta	ART4	chr12	14820569	14848526
ART4_chr12_14820569_14848526	0/0	c0010	945	1	1	0	0	0	0	copy fasta	ART4	chr12	14820569	14848526
ART4_chr12_14820569_14848526	0/0	c0011	945	1	1	0	0	0	0	copy fasta	ART4	chr12	14820569	14848526
ART4_chr12_14820569_14848526	0/0	c0012	945	1	0	0	1	0	0	copy fasta	ART4	chr12	14820569	14848526
ART4_chr12_14820569_14848526	0/0	c0013	945	1	0	0	0	1	0	copy fasta	ART4	chr12	14820569	14848526