JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRR15_chr7_29558835_29572293	1/0	c0003	390	114	22	18	68	0	5	copy fasta	PRR15	chr7	29558835	29572293
PRR15_chr7_29558835_29572293	0/0	c0004	390	11	0	4	1	1	5	copy fasta	PRR15	chr7	29558835	29572293
PRR15_chr7_29558835_29572293	0/0	c0005	390	1	1	0	0	0	0	copy fasta	PRR15	chr7	29558835	29572293
PRR16_chr5_120459300_120692314	0/0	c0001	915	151	73	37	21	9	11	copy fasta	PRR16	chr5	120459300	120692314
PRR16_chr5_120459300_120692314	0/0	c0002	915	13	5	3	1	1	3	copy fasta	PRR16	chr5	120459300	120692314
PRR16_chr5_120459300_120692314	0/0	c0003	915	5	5	0	0	0	0	copy fasta	PRR16	chr5	120459300	120692314
PRR16_chr5_120459300_120692314	0/0	c0004	915	1	1	0	0	0	0	copy fasta	PRR16	chr5	120459300	120692314
PRR18_chr6_166300300_166313392	0/0	c0001	888	186	29	43	95	6	13	copy fasta	PRR18	chr6	166300300	166313392
PRR18_chr6_166300300_166313392	0/1	c0002	888	148	39	14	65	8	21	copy fasta	PRR18	chr6	166300300	166313392
PRR18_chr6_166300300_166313392	1/0	c0003	888	68	13	23	18	2	11	copy fasta	PRR18	chr6	166300300	166313392
PRR18_chr6_166300300_166313392	0/0	c0004	888	8	8	0	0	0	0	copy fasta	PRR18	chr6	166300300	166313392
PRR18_chr6_166300300_166313392	0/0	c0005	888	2	0	0	2	0	0	copy fasta	PRR18	chr6	166300300	166313392
PRR18_chr6_166300300_166313392	0/0	c0006	888	1	0	0	0	0	1	copy fasta	PRR18	chr6	166300300	166313392
PRR18_chr6_166300300_166313392	0/0	c0007	888	1	0	0	1	0	0	copy fasta	PRR18	chr6	166300300	166313392
PRR18_chr6_166300300_166313392	0/0	c0008	888	1	1	0	0	0	0	copy fasta	PRR18	chr6	166300300	166313392
PRR18_chr6_166300300_166313392	0/0	c0009	888	1	0	0	1	0	0	copy fasta	PRR18	chr6	166300300	166313392
PRR18_chr6_166300300_166313392	0/0	c0010	888	1	1	0	0	0	0	copy fasta	PRR18	chr6	166300300	166313392
PRR18_chr6_166300300_166313392	0/0	c0011	888	1	1	0	0	0	0	copy fasta	PRR18	chr6	166300300	166313392
PRR18_chr6_166300300_166313392	0/0	c0012	888	1	1	0	0	0	0	copy fasta	PRR18	chr6	166300300	166313392
PRR18_chr6_166300300_166313392	0/0	c0013	888	1	1	0	0	0	0	copy fasta	PRR18	chr6	166300300	166313392
PRR18_chr6_166300300_166313392	0/0	c0014	888	1	0	0	0	0	1	copy fasta	PRR18	chr6	166300300	166313392
PRR18_chr6_166300300_166313392	0/0	c0015	888	1	0	0	0	0	1	copy fasta	PRR18	chr6	166300300	166313392
PRR19_chr19_42297132_42315814	1/1	c0001	1071	264	73	65	85	7	32	copy fasta	PRR19	chr19	42297132	42315814
PRR19_chr19_42297132_42315814	0/0	c0002	1071	10	10	0	0	0	0	copy fasta	PRR19	chr19	42297132	42315814
PRR19_chr19_42297132_42315814	0/0	c0003	1071	1	0	0	0	1	0	copy fasta	PRR19	chr19	42297132	42315814
PRR19_chr19_42297132_42315814	0/0	c0004	1071	1	0	1	0	0	0	copy fasta	PRR19	chr19	42297132	42315814
PRR19_chr19_42297132_42315814	0/0	c0005	1071	1	1	0	0	0	0	copy fasta	PRR19	chr19	42297132	42315814
PRR19_chr19_42297132_42315814	0/0	c0006	1081	1	0	0	1	0	0	copy fasta	PRR19	chr19	42297132	42315814
PRR20A_chr13_57135918_57148939	0/0	c0000	0	3	0	1	0	0	2	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	c0001	666	200	52	34	85	7	22	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	c0002	666	36	5	16	11	2	2	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	c0003	666	29	3	6	13	0	7	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	c0004	665	27	2	4	17	0	4	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	c0005	666	21	21	0	0	0	0	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	c0006	665	3	0	1	1	1	0	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	c0007	666	2	0	0	2	0	0	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	c0008	691	1	0	0	1	0	0	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	c0009	666	1	1	0	0	0	0	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	c0010	666	1	0	0	1	0	0	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	c0011	666	1	0	1	0	0	0	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	c0012	666	1	0	0	0	0	1	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	c0013	666	1	0	1	0	0	0	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	c0014	665	1	0	1	0	0	0	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	c0015	665	1	0	0	1	0	0	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	c0016	666	1	0	1	0	0	0	copy fasta	PRR20A	chr13	57135918	57148939
PRR20B_chr13_57142488_57155509	0/0	c0001	666	134	33	34	47	10	10	copy fasta	PRR20B	chr13	57142488	57155509
PRR20B_chr13_57142488_57155509	0/0	c0002	666	14	0	4	8	0	2	copy fasta	PRR20B	chr13	57142488	57155509
PRR20B_chr13_57142488_57155509	0/0	c0003	666	9	0	1	4	0	4	copy fasta	PRR20B	chr13	57142488	57155509
PRR20B_chr13_57142488_57155509	0/0	c0004	666	3	2	1	0	0	0	copy fasta	PRR20B	chr13	57142488	57155509
PRR20B_chr13_57142488_57155509	0/0	c0005	666	1	1	0	0	0	0	copy fasta	PRR20B	chr13	57142488	57155509