JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRR20B_chr13_57142488_57155509	0/0	c0006	649	1	0	0	1	0	0	copy fasta	PRR20B	chr13	57142488	57155509
PRR20B_chr13_57142488_57155509	0/0	c0007	666	1	0	0	0	0	1	copy fasta	PRR20B	chr13	57142488	57155509
PRR20B_chr13_57142488_57155509	0/0	c0008	666	1	0	0	1	0	0	copy fasta	PRR20B	chr13	57142488	57155509
PRR20B_chr13_57142488_57155509	0/0	c0009	666	1	0	0	1	0	0	copy fasta	PRR20B	chr13	57142488	57155509
PRR20B_chr13_57142488_57155509	0/0	c0010	666	1	0	0	0	0	1	copy fasta	PRR20B	chr13	57142488	57155509
PRR20B_chr13_57142488_57155509	0/0	c0011	666	1	1	0	0	0	0	copy fasta	PRR20B	chr13	57142488	57155509
PRR20B_chr13_57142488_57155509	0/0	c0012	666	1	1	0	0	0	0	copy fasta	PRR20B	chr13	57142488	57155509
PRR20C_chr13_57149061_57162082	0/0	c0001	666	99	22	23	36	7	11	copy fasta	PRR20C	chr13	57149061	57162082
PRR20C_chr13_57149061_57162082	0/0	c0002	666	16	0	8	7	0	1	copy fasta	PRR20C	chr13	57149061	57162082
PRR20C_chr13_57149061_57162082	0/0	c0003	666	13	0	6	3	1	3	copy fasta	PRR20C	chr13	57149061	57162082
PRR20C_chr13_57149061_57162082	0/0	c0004	666	1	0	0	1	0	0	copy fasta	PRR20C	chr13	57149061	57162082
PRR20C_chr13_57149061_57162082	0/0	c0005	665	1	0	0	1	0	0	copy fasta	PRR20C	chr13	57149061	57162082
PRR20C_chr13_57149061_57162082	0/0	c0006	666	1	0	1	0	0	0	copy fasta	PRR20C	chr13	57149061	57162082
PRR20C_chr13_57149061_57162082	0/0	c0007	664	1	0	0	1	0	0	copy fasta	PRR20C	chr13	57149061	57162082
PRR20C_chr13_57149061_57162082	0/0	c0008	666	1	0	0	0	0	1	copy fasta	PRR20C	chr13	57149061	57162082
PRR20C_chr13_57149061_57162082	0/0	c0009	666	1	1	0	0	0	0	copy fasta	PRR20C	chr13	57149061	57162082
PRR20C_chr13_57149061_57162082	0/0	c0010	666	1	0	0	1	0	0	copy fasta	PRR20C	chr13	57149061	57162082
PRR20C_chr13_57149061_57162082	0/0	c0011	666	1	1	0	0	0	0	copy fasta	PRR20C	chr13	57149061	57162082
PRR20C_chr13_57149061_57162082	0/0	c0012	665	1	0	1	0	0	0	copy fasta	PRR20C	chr13	57149061	57162082
PRR20D_chr13_57155632_57168653	0/0	c0000	0	1	0	0	1	0	0	copy fasta	PRR20D	chr13	57155632	57168653
PRR20D_chr13_57155632_57168653	0/0	c0001	666	110	23	28	38	6	15	copy fasta	PRR20D	chr13	57155632	57168653
PRR20D_chr13_57155632_57168653	0/0	c0002	666	17	0	6	5	0	6	copy fasta	PRR20D	chr13	57155632	57168653
PRR20D_chr13_57155632_57168653	0/0	c0003	666	15	0	4	8	0	3	copy fasta	PRR20D	chr13	57155632	57168653
PRR20D_chr13_57155632_57168653	0/0	c0004	666	1	0	1	0	0	0	copy fasta	PRR20D	chr13	57155632	57168653
PRR20D_chr13_57155632_57168653	0/0	c0005	666	1	1	0	0	0	0	copy fasta	PRR20D	chr13	57155632	57168653
PRR20D_chr13_57155632_57168653	0/0	c0006	666	1	0	1	0	0	0	copy fasta	PRR20D	chr13	57155632	57168653
PRR20E_chr13_57162197_57175218	0/0	c0001	666	188	52	30	73	10	23	copy fasta	PRR20E	chr13	57162197	57175218
PRR20E_chr13_57162197_57175218	0/0	c0002	666	41	4	16	13	2	6	copy fasta	PRR20E	chr13	57162197	57175218
PRR20E_chr13_57162197_57175218	0/0	c0003	666	19	0	3	12	0	4	copy fasta	PRR20E	chr13	57162197	57175218
PRR20E_chr13_57162197_57175218	0/0	c0004	666	2	2	0	0	0	0	copy fasta	PRR20E	chr13	57162197	57175218
PRR20E_chr13_57162197_57175218	0/0	c0005	666	1	0	0	1	0	0	copy fasta	PRR20E	chr13	57162197	57175218
PRR20E_chr13_57162197_57175218	0/0	c0006	666	1	0	0	0	0	1	copy fasta	PRR20E	chr13	57162197	57175218
PRR20E_chr13_57162197_57175218	0/0	c0007	666	1	0	0	0	0	1	copy fasta	PRR20E	chr13	57162197	57175218
PRR20E_chr13_57162197_57175218	0/0	c0008	666	1	0	0	1	0	0	copy fasta	PRR20E	chr13	57162197	57175218
PRR20E_chr13_57162197_57175218	0/0	c0009	666	1	1	0	0	0	0	copy fasta	PRR20E	chr13	57162197	57175218
PRR20E_chr13_57162197_57175218	0/0	c0010	666	1	0	0	0	0	1	copy fasta	PRR20E	chr13	57162197	57175218
PRR20E_chr13_57162197_57175218	0/0	c0011	666	1	1	0	0	0	0	copy fasta	PRR20E	chr13	57162197	57175218
PRR20E_chr13_57162197_57175218	0/0	c0012	666	1	0	1	0	0	0	copy fasta	PRR20E	chr13	57162197	57175218
PRR20G_chr3_127278783_127293046	0/1	c0001	633	196	34	25	118	0	18	copy fasta	PRR20G	chr3	127278783	127293046
PRR20G_chr3_127278783_127293046	0/0	c0002	633	92	29	24	23	10	6	copy fasta	PRR20G	chr3	127278783	127293046
PRR20G_chr3_127278783_127293046	1/0	c0003	633	90	6	21	43	3	16	copy fasta	PRR20G	chr3	127278783	127293046
PRR20G_chr3_127278783_127293046	0/0	c0004	633	38	14	14	0	5	5	copy fasta	PRR20G	chr3	127278783	127293046
PRR20G_chr3_127278783_127293046	0/0	c0005	633	9	0	0	9	0	0	copy fasta	PRR20G	chr3	127278783	127293046
PRR20G_chr3_127278783_127293046	0/0	c0006	633	1	0	0	1	0	0	copy fasta	PRR20G	chr3	127278783	127293046
PRR20G_chr3_127278783_127293046	0/0	c0007	633	1	0	0	1	0	0	copy fasta	PRR20G	chr3	127278783	127293046
PRR20G_chr3_127278783_127293046	0/0	c0008	633	1	1	0	0	0	0	copy fasta	PRR20G	chr3	127278783	127293046
PRR20G_chr3_127278783_127293046	0/0	c0009	633	1	1	0	0	0	0	copy fasta	PRR20G	chr3	127278783	127293046
PRR20G_chr3_127278783_127293046	0/0	c0010	633	1	0	0	0	0	1	copy fasta	PRR20G	chr3	127278783	127293046
PRR20G_chr3_127278783_127293046	0/0	c0011	633	1	0	0	1	0	0	copy fasta	PRR20G	chr3	127278783	127293046
PRR20G_chr3_127278783_127293046	0/0	c0012	633	1	1	0	0	0	0	copy fasta	PRR20G	chr3	127278783	127293046