JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRR22_chr19_5777960_5789746	1/1	c0001	1269	161	16	52	60	13	18	copy fasta	PRR22	chr19	5777960	5789746
PRR22_chr19_5777960_5789746	0/0	c0002	1269	130	32	7	74	1	16	copy fasta	PRR22	chr19	5777960	5789746
PRR22_chr19_5777960_5789746	0/0	c0003	1269	26	19	4	2	0	1	copy fasta	PRR22	chr19	5777960	5789746
PRR22_chr19_5777960_5789746	0/0	c0004	1269	14	14	0	0	0	0	copy fasta	PRR22	chr19	5777960	5789746
PRR22_chr19_5777960_5789746	0/0	c0005	1270	10	0	2	7	0	1	copy fasta	PRR22	chr19	5777960	5789746
PRR22_chr19_5777960_5789746	0/0	c0006	1269	5	5	0	0	0	0	copy fasta	PRR22	chr19	5777960	5789746
PRR22_chr19_5777960_5789746	0/0	c0007	1269	5	0	3	0	1	1	copy fasta	PRR22	chr19	5777960	5789746
PRR22_chr19_5777960_5789746	0/0	c0008	1270	5	1	1	3	0	0	copy fasta	PRR22	chr19	5777960	5789746
PRR22_chr19_5777960_5789746	0/0	c0009	1269	4	0	3	0	1	0	copy fasta	PRR22	chr19	5777960	5789746
PRR22_chr19_5777960_5789746	0/0	c0010	1269	3	0	0	3	0	0	copy fasta	PRR22	chr19	5777960	5789746
PRR22_chr19_5777960_5789746	0/0	c0011	1269	3	2	0	0	0	1	copy fasta	PRR22	chr19	5777960	5789746
PRR22_chr19_5777960_5789746	0/0	c0012	1269	3	3	0	0	0	0	copy fasta	PRR22	chr19	5777960	5789746
PRR22_chr19_5777960_5789746	0/0	c0013	1269	2	0	0	2	0	0	copy fasta	PRR22	chr19	5777960	5789746
PRR22_chr19_5777960_5789746	0/0	c0014	1270	1	0	0	1	0	0	copy fasta	PRR22	chr19	5777960	5789746
PRR22_chr19_5777960_5789746	0/0	c0015	1269	1	0	0	0	1	0	copy fasta	PRR22	chr19	5777960	5789746
PRR22_chr19_5777960_5789746	0/0	c0016	1269	1	0	0	0	1	0	copy fasta	PRR22	chr19	5777960	5789746
PRR22_chr19_5777960_5789746	0/0	c0017	1269	1	0	0	1	0	0	copy fasta	PRR22	chr19	5777960	5789746
PRR22_chr19_5777960_5789746	0/0	c0018	1269	1	0	0	0	0	1	copy fasta	PRR22	chr19	5777960	5789746
PRR22_chr19_5777960_5789746	0/0	c0019	1269	1	1	0	0	0	0	copy fasta	PRR22	chr19	5777960	5789746
PRR22_chr19_5777960_5789746	0/0	c0020	1269	1	0	0	0	0	1	copy fasta	PRR22	chr19	5777960	5789746
PRR22_chr19_5777960_5789746	0/0	c0021	1269	1	1	0	0	0	0	copy fasta	PRR22	chr19	5777960	5789746
PRR22_chr19_5777960_5789746	0/0	c0022	1269	1	1	0	0	0	0	copy fasta	PRR22	chr19	5777960	5789746
PRR22_chr19_5777960_5789746	0/0	c0023	1269	1	0	0	1	0	0	copy fasta	PRR22	chr19	5777960	5789746
PRR22_chr19_5777960_5789746	0/0	c0024	1269	1	1	0	0	0	0	copy fasta	PRR22	chr19	5777960	5789746
PRR23A_chr3_138998962_139011268	0/0	c0001	801	191	31	43	83	13	21	copy fasta	PRR23A	chr3	138998962	139011268
PRR23A_chr3_138998962_139011268	1/1	c0002	801	185	52	36	79	3	13	copy fasta	PRR23A	chr3	138998962	139011268
PRR23A_chr3_138998962_139011268	0/0	c0003	801	7	0	3	0	0	4	copy fasta	PRR23A	chr3	138998962	139011268
PRR23A_chr3_138998962_139011268	0/0	c0004	801	1	1	0	0	0	0	copy fasta	PRR23A	chr3	138998962	139011268
PRR23B_chr3_139014031_139025926	1/1	c0001	798	380	77	75	170	16	40	copy fasta	PRR23B	chr3	139014031	139025926
PRR23B_chr3_139014031_139025926	0/0	c0002	798	12	10	2	0	0	0	copy fasta	PRR23B	chr3	139014031	139025926
PRR23B_chr3_139014031_139025926	0/0	c0003	798	11	0	0	11	0	0	copy fasta	PRR23B	chr3	139014031	139025926
PRR23B_chr3_139014031_139025926	0/0	c0004	798	2	2	0	0	0	0	copy fasta	PRR23B	chr3	139014031	139025926
PRR23B_chr3_139014031_139025926	0/0	c0005	798	2	0	0	2	0	0	copy fasta	PRR23B	chr3	139014031	139025926
PRR23B_chr3_139014031_139025926	0/0	c0006	798	1	0	0	1	0	0	copy fasta	PRR23B	chr3	139014031	139025926
PRR23B_chr3_139014031_139025926	0/0	c0007	798	1	0	0	1	0	0	copy fasta	PRR23B	chr3	139014031	139025926
PRR23B_chr3_139014031_139025926	0/0	c0008	798	1	0	1	0	0	0	copy fasta	PRR23B	chr3	139014031	139025926
PRR23B_chr3_139014031_139025926	0/0	c0009	798	1	0	0	1	0	0	copy fasta	PRR23B	chr3	139014031	139025926
PRR23B_chr3_139014031_139025926	0/0	c0010	798	1	1	0	0	0	0	copy fasta	PRR23B	chr3	139014031	139025926
PRR23C_chr3_139037102_139049892	1/1	c0001	789	339	83	56	154	13	31	copy fasta	PRR23C	chr3	139037102	139049892
PRR23C_chr3_139037102_139049892	0/0	c0002	789	73	6	21	43	0	3	copy fasta	PRR23C	chr3	139037102	139049892
PRR23C_chr3_139037102_139049892	0/0	c0003	789	6	0	3	0	0	3	copy fasta	PRR23C	chr3	139037102	139049892
PRR23C_chr3_139037102_139049892	0/0	c0004	789	2	0	0	2	0	0	copy fasta	PRR23C	chr3	139037102	139049892
PRR23C_chr3_139037102_139049892	0/0	c0005	789	1	0	0	0	0	1	copy fasta	PRR23C	chr3	139037102	139049892
PRR23C_chr3_139037102_139049892	0/0	c0006	789	1	0	0	0	1	0	copy fasta	PRR23C	chr3	139037102	139049892
PRR23C_chr3_139037102_139049892	0/0	c0007	789	1	0	0	1	0	0	copy fasta	PRR23C	chr3	139037102	139049892
PRR23C_chr3_139037102_139049892	0/0	c0008	789	1	0	0	1	0	0	copy fasta	PRR23C	chr3	139037102	139049892
PRR23C_chr3_139037102_139049892	0/0	c0009	789	1	1	0	0	0	0	copy fasta	PRR23C	chr3	139037102	139049892
PRR23C_chr3_139037102_139049892	0/0	c0010	789	1	0	0	1	0	0	copy fasta	PRR23C	chr3	139037102	139049892
PRR23D1_chr8_7534627_7547450	0/0	c0001	839	55	4	9	36	3	3	copy fasta	PRR23D1	chr8	7534627	7547450
PRR23D1_chr8_7534627_7547450	0/0	c0002	840	54	6	11	26	5	6	copy fasta	PRR23D1	chr8	7534627	7547450