JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRR23D1_chr8_7534627_7547450	0/0	c0003	840	34	0	8	16	2	8	copy fasta	PRR23D1	chr8	7534627	7547450
PRR23D1_chr8_7534627_7547450	0/0	c0004	840	7	5	0	2	0	0	copy fasta	PRR23D1	chr8	7534627	7547450
PRR23D1_chr8_7534627_7547450	0/0	c0005	840	5	1	1	0	2	1	copy fasta	PRR23D1	chr8	7534627	7547450
PRR23D1_chr8_7534627_7547450	0/0	c0006	840	3	0	1	2	0	0	copy fasta	PRR23D1	chr8	7534627	7547450
PRR23D1_chr8_7534627_7547450	0/0	c0007	839	2	0	0	2	0	0	copy fasta	PRR23D1	chr8	7534627	7547450
PRR23D1_chr8_7534627_7547450	0/0	c0008	839	1	0	0	1	0	0	copy fasta	PRR23D1	chr8	7534627	7547450
PRR23D1_chr8_7534627_7547450	0/0	c0009	840	1	1	0	0	0	0	copy fasta	PRR23D1	chr8	7534627	7547450
PRR23D1_chr8_7534627_7547450	0/0	c0010	840	1	1	0	0	0	0	copy fasta	PRR23D1	chr8	7534627	7547450
PRR23D1_chr8_7534627_7547450	0/0	c0011	839	1	1	0	0	0	0	copy fasta	PRR23D1	chr8	7534627	7547450
PRR23D1_chr8_7534627_7547450	0/0	c0012	839	1	0	0	1	0	0	copy fasta	PRR23D1	chr8	7534627	7547450
PRR23D1_chr8_7534627_7547450	0/0	c0013	840	1	1	0	0	0	0	copy fasta	PRR23D1	chr8	7534627	7547450
PRR23D2_chr8_7773591_7786413	0/0	c0001	840	40	13	3	16	1	7	copy fasta	PRR23D2	chr8	7773591	7786413
PRR23D2_chr8_7773591_7786413	0/0	c0002	839	22	8	2	7	0	5	copy fasta	PRR23D2	chr8	7773591	7786413
PRR23D2_chr8_7773591_7786413	0/0	c0003	840	21	1	2	17	1	0	copy fasta	PRR23D2	chr8	7773591	7786413
PRR23D2_chr8_7773591_7786413	0/0	c0004	840	12	0	3	6	0	3	copy fasta	PRR23D2	chr8	7773591	7786413
PRR23D2_chr8_7773591_7786413	0/0	c0005	840	8	0	6	0	2	0	copy fasta	PRR23D2	chr8	7773591	7786413
PRR23D2_chr8_7773591_7786413	0/0	c0006	840	3	2	0	0	1	0	copy fasta	PRR23D2	chr8	7773591	7786413
PRR23D2_chr8_7773591_7786413	0/0	c0007	840	3	0	2	1	0	0	copy fasta	PRR23D2	chr8	7773591	7786413
PRR23D2_chr8_7773591_7786413	0/0	c0008	840	2	2	0	0	0	0	copy fasta	PRR23D2	chr8	7773591	7786413
PRR23D2_chr8_7773591_7786413	0/0	c0009	840	2	0	2	0	0	0	copy fasta	PRR23D2	chr8	7773591	7786413
PRR23D2_chr8_7773591_7786413	0/0	c0010	840	2	2	0	0	0	0	copy fasta	PRR23D2	chr8	7773591	7786413
PRR23D2_chr8_7773591_7786413	0/0	c0011	840	1	0	0	1	0	0	copy fasta	PRR23D2	chr8	7773591	7786413
PRR23D2_chr8_7773591_7786413	0/0	c0012	840	1	0	0	0	1	0	copy fasta	PRR23D2	chr8	7773591	7786413
PRR23D2_chr8_7773591_7786413	0/0	c0013	840	1	1	0	0	0	0	copy fasta	PRR23D2	chr8	7773591	7786413
PRR23D2_chr8_7773591_7786413	0/0	c0014	840	1	1	0	0	0	0	copy fasta	PRR23D2	chr8	7773591	7786413
PRR23D2_chr8_7773591_7786413	0/0	c0015	840	1	0	0	0	0	1	copy fasta	PRR23D2	chr8	7773591	7786413
PRR23D2_chr8_7773591_7786413	0/0	c0016	840	1	1	0	0	0	0	copy fasta	PRR23D2	chr8	7773591	7786413
PRR23D2_chr8_7773591_7786413	0/0	c0017	840	1	1	0	0	0	0	copy fasta	PRR23D2	chr8	7773591	7786413
PRR23E_chr3_127188131_127203185	1/1	c0001	729	438	82	82	212	16	44	copy fasta	PRR23E	chr3	127188131	127203185
PRR23E_chr3_127188131_127203185	0/0	c0002	729	6	6	0	0	0	0	copy fasta	PRR23E	chr3	127188131	127203185
PRR23E_chr3_127188131_127203185	0/0	c0003	729	5	2	3	0	0	0	copy fasta	PRR23E	chr3	127188131	127203185
PRR23E_chr3_127188131_127203185	0/0	c0004	729	3	2	1	0	0	0	copy fasta	PRR23E	chr3	127188131	127203185
PRR23E_chr3_127188131_127203185	0/0	c0005	729	1	0	0	1	0	0	copy fasta	PRR23E	chr3	127188131	127203185
PRR23E_chr3_127188131_127203185	0/0	c0006	729	1	0	0	1	0	0	copy fasta	PRR23E	chr3	127188131	127203185
PRR23E_chr3_127188131_127203185	0/0	c0007	729	1	1	0	0	0	0	copy fasta	PRR23E	chr3	127188131	127203185
PRR23E_chr3_127188131_127203185	0/0	c0008	729	1	1	0	0	0	0	copy fasta	PRR23E	chr3	127188131	127203185
PRR27_chr4_70149237_70171609	1/1	c0001	660	410	87	65	201	14	41	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	c0002	660	11	8	0	0	0	3	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	c0003	660	8	0	4	0	2	2	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	c0004	660	3	3	0	0	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	c0005	660	2	0	0	2	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	c0006	660	2	0	0	2	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	c0007	660	2	0	0	2	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	c0008	660	2	0	0	2	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	c0009	660	2	0	0	2	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	c0010	660	1	0	1	0	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	c0011	660	1	0	0	1	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR29_chr17_63993351_64009305	1/0	c0001	570	303	69	55	133	12	33	copy fasta	PRR29	chr17	63993351	64009305
PRR29_chr17_63993351_64009305	0/1	c0002	570	97	23	21	35	6	11	copy fasta	PRR29	chr17	63993351	64009305
PRR29_chr17_63993351_64009305	0/0	c0003	570	4	3	1	0	0	0	copy fasta	PRR29	chr17	63993351	64009305