JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRR29_chr17_63993351_64009305	0/0	c0004	570	1	0	1	0	0	0	copy fasta	PRR29	chr17	63993351	64009305
PRR29_chr17_63993351_64009305	0/0	c0005	570	1	1	0	0	0	0	copy fasta	PRR29	chr17	63993351	64009305
PRR30_chr2_27131848_27144410	1/1	c0001	1239	311	58	66	137	17	31	copy fasta	PRR30	chr2	27131848	27144410
PRR30_chr2_27131848_27144410	0/0	c0002	1239	25	0	0	25	0	0	copy fasta	PRR30	chr2	27131848	27144410
PRR30_chr2_27131848_27144410	0/0	c0003	1239	17	12	5	0	0	0	copy fasta	PRR30	chr2	27131848	27144410
PRR30_chr2_27131848_27144410	0/0	c0004	1239	6	0	0	6	0	0	copy fasta	PRR30	chr2	27131848	27144410
PRR30_chr2_27131848_27144410	0/0	c0005	1239	5	4	1	0	0	0	copy fasta	PRR30	chr2	27131848	27144410
PRR30_chr2_27131848_27144410	0/0	c0006	1239	5	5	0	0	0	0	copy fasta	PRR30	chr2	27131848	27144410
PRR30_chr2_27131848_27144410	0/0	c0007	1239	4	4	0	0	0	0	copy fasta	PRR30	chr2	27131848	27144410
PRR30_chr2_27131848_27144410	0/0	c0008	1239	3	3	0	0	0	0	copy fasta	PRR30	chr2	27131848	27144410
PRR30_chr2_27131848_27144410	0/0	c0009	1239	2	2	0	0	0	0	copy fasta	PRR30	chr2	27131848	27144410
PRR30_chr2_27131848_27144410	0/0	c0010	1239	1	1	0	0	0	0	copy fasta	PRR30	chr2	27131848	27144410
PRR30_chr2_27131848_27144410	0/0	c0011	1239	1	1	0	0	0	0	copy fasta	PRR30	chr2	27131848	27144410
PRR30_chr2_27131848_27144410	0/0	c0012	1239	1	0	0	1	0	0	copy fasta	PRR30	chr2	27131848	27144410
PRR30_chr2_27131848_27144410	0/0	c0013	1239	1	0	0	0	0	1	copy fasta	PRR30	chr2	27131848	27144410
PRR30_chr2_27131848_27144410	0/0	c0014	1239	1	0	0	0	1	0	copy fasta	PRR30	chr2	27131848	27144410
PRR30_chr2_27131848_27144410	0/0	c0015	1239	1	0	0	1	0	0	copy fasta	PRR30	chr2	27131848	27144410
PRR30_chr2_27131848_27144410	0/0	c0016	1239	1	0	1	0	0	0	copy fasta	PRR30	chr2	27131848	27144410
PRR30_chr2_27131848_27144410	0/0	c0017	1239	1	0	1	0	0	0	copy fasta	PRR30	chr2	27131848	27144410
PRR32_chrX_126814729_126826786	0/1	c0001	897	107	3	13	72	6	12	copy fasta	PRR32	chrX	126814729	126826786
PRR32_chrX_126814729_126826786	1/0	c0002	897	107	44	31	19	2	10	copy fasta	PRR32	chrX	126814729	126826786
PRR32_chrX_126814729_126826786	0/0	c0003	897	60	2	8	50	0	0	copy fasta	PRR32	chrX	126814729	126826786
PRR32_chrX_126814729_126826786	0/0	c0004	897	23	19	2	1	0	1	copy fasta	PRR32	chrX	126814729	126826786
PRR32_chrX_126814729_126826786	0/0	c0005	897	16	0	4	5	3	4	copy fasta	PRR32	chrX	126814729	126826786
PRR32_chrX_126814729_126826786	0/0	c0006	897	9	9	0	0	0	0	copy fasta	PRR32	chrX	126814729	126826786
PRR32_chrX_126814729_126826786	0/0	c0007	897	4	1	1	0	0	2	copy fasta	PRR32	chrX	126814729	126826786
PRR32_chrX_126814729_126826786	0/0	c0008	897	3	0	1	0	0	2	copy fasta	PRR32	chrX	126814729	126826786
PRR32_chrX_126814729_126826786	0/0	c0009	897	2	0	0	2	0	0	copy fasta	PRR32	chrX	126814729	126826786
PRR32_chrX_126814729_126826786	0/0	c0010	897	1	1	0	0	0	0	copy fasta	PRR32	chrX	126814729	126826786
PRR32_chrX_126814729_126826786	0/0	c0011	897	1	0	0	0	0	1	copy fasta	PRR32	chrX	126814729	126826786
PRR32_chrX_126814729_126826786	0/0	c0012	897	1	1	0	0	0	0	copy fasta	PRR32	chrX	126814729	126826786
PRR33_chr11_1883078_1896895	0/1	c0001	1440	210	30	51	94	6	28	copy fasta	PRR33	chr11	1883078	1896895
PRR33_chr11_1883078_1896895	0/0	c0002	1440	35	13	6	11	0	5	copy fasta	PRR33	chr11	1883078	1896895
PRR33_chr11_1883078_1896895	0/0	c0003	1440	14	0	1	10	2	1	copy fasta	PRR33	chr11	1883078	1896895
PRR33_chr11_1883078_1896895	0/0	c0004	1440	13	9	3	0	1	0	copy fasta	PRR33	chr11	1883078	1896895
PRR33_chr11_1883078_1896895	1/0	c0005	1440	11	3	6	0	1	0	copy fasta	PRR33	chr11	1883078	1896895
PRR33_chr11_1883078_1896895	0/0	c0006	1440	6	6	0	0	0	0	copy fasta	PRR33	chr11	1883078	1896895
PRR33_chr11_1883078_1896895	0/0	c0007	1440	4	4	0	0	0	0	copy fasta	PRR33	chr11	1883078	1896895
PRR33_chr11_1883078_1896895	0/0	c0008	1440	3	3	0	0	0	0	copy fasta	PRR33	chr11	1883078	1896895
PRR33_chr11_1883078_1896895	0/0	c0009	1440	2	0	1	1	0	0	copy fasta	PRR33	chr11	1883078	1896895
PRR33_chr11_1883078_1896895	0/0	c0010	1440	2	0	2	0	0	0	copy fasta	PRR33	chr11	1883078	1896895
PRR33_chr11_1883078_1896895	0/0	c0011	1440	1	0	0	1	0	0	copy fasta	PRR33	chr11	1883078	1896895
PRR33_chr11_1883078_1896895	0/0	c0012	1440	1	1	0	0	0	0	copy fasta	PRR33	chr11	1883078	1896895
PRR33_chr11_1883078_1896895	0/0	c0013	1440	1	1	0	0	0	0	copy fasta	PRR33	chr11	1883078	1896895
PRR33_chr11_1883078_1896895	0/0	c0014	1440	1	1	0	0	0	0	copy fasta	PRR33	chr11	1883078	1896895
PRR33_chr11_1883078_1896895	0/0	c0015	1440	1	1	0	0	0	0	copy fasta	PRR33	chr11	1883078	1896895
PRR33_chr11_1883078_1896895	0/0	c0016	1440	1	0	0	1	0	0	copy fasta	PRR33	chr11	1883078	1896895
PRR33_chr11_1883078_1896895	0/0	c0017	1440	1	1	0	0	0	0	copy fasta	PRR33	chr11	1883078	1896895
PRR33_chr11_1883078_1896895	0/0	c0018	1440	1	1	0	0	0	0	copy fasta	PRR33	chr11	1883078	1896895
PRR35_chr16_555394_570529	1/1	c0001	1716	342	61	68	172	11	28	copy fasta	PRR35	chr16	555394	570529