JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRR35_chr16_555394_570529	0/0	c0002	1716	24	1	4	1	3	15	copy fasta	PRR35	chr16	555394	570529
PRR35_chr16_555394_570529	0/0	c0003	1716	15	6	4	4	0	1	copy fasta	PRR35	chr16	555394	570529
PRR35_chr16_555394_570529	0/0	c0004	1716	14	10	1	3	0	0	copy fasta	PRR35	chr16	555394	570529
PRR35_chr16_555394_570529	0/0	c0005	1716	4	3	1	0	0	0	copy fasta	PRR35	chr16	555394	570529
PRR35_chr16_555394_570529	0/0	c0006	1716	3	3	0	0	0	0	copy fasta	PRR35	chr16	555394	570529
PRR35_chr16_555394_570529	0/0	c0007	1716	3	0	0	3	0	0	copy fasta	PRR35	chr16	555394	570529
PRR35_chr16_555394_570529	0/0	c0008	1716	2	2	0	0	0	0	copy fasta	PRR35	chr16	555394	570529
PRR35_chr16_555394_570529	0/0	c0009	1716	2	2	0	0	0	0	copy fasta	PRR35	chr16	555394	570529
PRR35_chr16_555394_570529	0/0	c0010	1716	1	0	0	1	0	0	copy fasta	PRR35	chr16	555394	570529
PRR35_chr16_555394_570529	0/0	c0011	1716	1	1	0	0	0	0	copy fasta	PRR35	chr16	555394	570529
PRR35_chr16_555394_570529	0/0	c0012	1716	1	0	0	1	0	0	copy fasta	PRR35	chr16	555394	570529
PRR35_chr16_555394_570529	0/0	c0013	1716	1	1	0	0	0	0	copy fasta	PRR35	chr16	555394	570529
PRR35_chr16_555394_570529	0/0	c0014	1716	1	0	1	0	0	0	copy fasta	PRR35	chr16	555394	570529
PRR35_chr16_555394_570529	0/0	c0015	1716	1	1	0	0	0	0	copy fasta	PRR35	chr16	555394	570529
PRR35_chr16_555394_570529	0/0	c0016	1716	1	1	0	0	0	0	copy fasta	PRR35	chr16	555394	570529
PRR35_chr16_555394_570529	0/0	c0017	1716	1	1	0	0	0	0	copy fasta	PRR35	chr16	555394	570529
PRR35_chr16_555394_570529	0/0	c0018	1716	1	1	0	0	0	0	copy fasta	PRR35	chr16	555394	570529
PRR35_chr16_555394_570529	0/0	c0019	1716	1	1	0	0	0	0	copy fasta	PRR35	chr16	555394	570529
PRR35_chr16_555394_570529	0/0	c0020	1716	1	0	0	1	0	0	copy fasta	PRR35	chr16	555394	570529
PRR35_chr16_555394_570529	0/0	c0021	1716	1	0	0	1	0	0	copy fasta	PRR35	chr16	555394	570529
PRR35_chr16_555394_570529	0/0	c0022	1716	1	1	0	0	0	0	copy fasta	PRR35	chr16	555394	570529
PRR35_chr16_555394_570529	0/0	c0023	1716	1	0	0	1	0	0	copy fasta	PRR35	chr16	555394	570529
PRR35_chr16_555394_570529	0/0	c0024	1716	1	0	1	0	0	0	copy fasta	PRR35	chr16	555394	570529
PRR36_chr19_7863719_7879390	1/1	c0001	4041	101	21	14	49	5	10	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	c0002	3972	80	5	30	25	5	15	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	c0003	3972	79	13	17	28	4	17	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	c0004	4041	25	14	8	0	0	3	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	c0005	3972	18	0	3	15	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	c0006	3972	16	3	1	10	0	2	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	c0007	3972	9	9	0	0	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	c0008	4041	4	4	0	0	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	c0009	3936	3	0	0	3	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	c0010	3972	3	3	0	0	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	c0011	4041	3	3	0	0	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	c0012	4041	2	2	0	0	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	c0013	3972	2	0	0	2	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	c0014	4041	2	0	1	1	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	c0015	4041	2	2	0	0	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	c0016	3972	2	2	0	0	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	c0017	4077	2	2	0	0	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	c0018	4041	1	1	0	0	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	c0019	3972	1	0	1	0	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	c0020	4041	1	0	0	1	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	c0021	3972	1	1	0	0	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	c0022	3936	1	1	0	0	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	c0023	4041	1	1	0	0	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	c0024	3972	1	0	1	0	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	c0025	3973	1	0	0	1	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	c0026	3973	1	0	0	1	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	c0027	4008	1	0	0	0	0	1	copy fasta	PRR36	chr19	7863719	7879390