JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRR36_chr19_7863719_7879390	0/0	c0028	3972	1	0	0	0	0	1	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	c0029	3972	1	0	0	1	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	c0030	3972	1	0	0	1	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	c0031	3972	1	0	0	1	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	c0032	3972	1	0	0	1	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	c0033	3879	1	1	0	0	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	c0034	3879	1	1	0	0	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	c0035	4041	1	1	0	0	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	c0036	3879	1	0	0	0	0	1	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	c0037	3973	1	0	0	1	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	c0038	4041	1	1	0	0	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	c0039	4041	1	1	0	0	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	c0040	4041	1	0	0	1	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	c0041	4041	1	1	0	0	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	c0042	4134	1	1	0	0	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	c0043	4134	1	1	0	0	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	c0044	4041	1	0	0	0	1	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	c0045	4041	1	0	0	1	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	c0046	4041	1	0	0	1	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	c0047	3972	1	0	1	0	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	c0048	3983	1	0	0	0	1	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	c0049	3972	1	1	0	0	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	c0050	4041	1	0	1	0	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR3_chr6_30552295_30568723	0/1	c0001	567	290	67	41	135	10	36	copy fasta	PRR3	chr6	30552295	30568723
PRR3_chr6_30552295_30568723	0/0	c0002	567	102	13	31	48	5	5	copy fasta	PRR3	chr6	30552295	30568723
PRR3_chr6_30552295_30568723	0/0	c0003	567	17	7	0	7	0	3	copy fasta	PRR3	chr6	30552295	30568723
PRR3_chr6_30552295_30568723	0/0	c0004	567	12	0	0	12	0	0	copy fasta	PRR3	chr6	30552295	30568723
PRR3_chr6_30552295_30568723	0/0	c0005	567	7	5	2	0	0	0	copy fasta	PRR3	chr6	30552295	30568723
PRR3_chr6_30552295_30568723	0/0	c0006	567	1	0	1	0	0	0	copy fasta	PRR3	chr6	30552295	30568723
PRR3_chr6_30552295_30568723	0/0	c0007	567	1	0	1	0	0	0	copy fasta	PRR3	chr6	30552295	30568723
PRR3_chr6_30552295_30568723	0/0	c0008	567	1	0	0	0	1	0	copy fasta	PRR3	chr6	30552295	30568723
PRR4_chr12_10840849_10854475	0/0	c0001	405	172	21	39	71	10	31	copy fasta	PRR4	chr12	10840849	10854475
PRR4_chr12_10840849_10854475	0/0	c0002	405	87	52	17	9	3	6	copy fasta	PRR4	chr12	10840849	10854475
PRR4_chr12_10840849_10854475	0/1	c0003	405	82	19	18	36	1	7	copy fasta	PRR4	chr12	10840849	10854475
PRR5L_chr11_36291288_36470204	0/1	c0001	1107	136	23	34	57	7	14	copy fasta	PRR5L	chr11	36291288	36470204
PRR5L_chr11_36291288_36470204	0/0	c0002	1107	30	5	3	17	0	5	copy fasta	PRR5L	chr11	36291288	36470204
PRR5L_chr11_36291288_36470204	0/0	c0003	1107	26	7	8	8	0	3	copy fasta	PRR5L	chr11	36291288	36470204
PRR5L_chr11_36291288_36470204	0/0	c0004	1107	25	22	3	0	0	0	copy fasta	PRR5L	chr11	36291288	36470204
PRR5L_chr11_36291288_36470204	0/0	c0005	1107	12	6	0	6	0	0	copy fasta	PRR5L	chr11	36291288	36470204
PRR5L_chr11_36291288_36470204	0/0	c0006	1107	8	0	6	0	1	1	copy fasta	PRR5L	chr11	36291288	36470204
PRR5L_chr11_36291288_36470204	0/0	c0007	1107	7	0	0	6	0	1	copy fasta	PRR5L	chr11	36291288	36470204
PRR5L_chr11_36291288_36470204	0/0	c0008	1107	4	4	0	0	0	0	copy fasta	PRR5L	chr11	36291288	36470204
PRR5L_chr11_36291288_36470204	0/0	c0009	1107	3	3	0	0	0	0	copy fasta	PRR5L	chr11	36291288	36470204
PRR5L_chr11_36291288_36470204	0/0	c0010	1107	3	0	1	0	1	1	copy fasta	PRR5L	chr11	36291288	36470204
PRR5L_chr11_36291288_36470204	0/0	c0011	1107	3	0	0	3	0	0	copy fasta	PRR5L	chr11	36291288	36470204
PRR5L_chr11_36291288_36470204	0/0	c0012	1107	3	3	0	0	0	0	copy fasta	PRR5L	chr11	36291288	36470204
PRR5L_chr11_36291288_36470204	0/0	c0013	1107	2	1	1	0	0	0	copy fasta	PRR5L	chr11	36291288	36470204
PRR5L_chr11_36291288_36470204	0/0	c0014	1107	2	0	1	0	0	1	copy fasta	PRR5L	chr11	36291288	36470204
PRR5L_chr11_36291288_36470204	0/0	c0015	1107	2	2	0	0	0	0	copy fasta	PRR5L	chr11	36291288	36470204
PRR5L_chr11_36291288_36470204	0/0	c0016	1107	1	0	0	1	0	0	copy fasta	PRR5L	chr11	36291288	36470204