JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRR5L_chr11_36291288_36470204	1/0	c0017	1107	1	0	0	0	0	0	copy fasta	PRR5L	chr11	36291288	36470204
PRR5L_chr11_36291288_36470204	0/0	c0018	1107	1	0	1	0	0	0	copy fasta	PRR5L	chr11	36291288	36470204
PRR5L_chr11_36291288_36470204	0/0	c0019	1107	1	0	0	0	1	0	copy fasta	PRR5L	chr11	36291288	36470204
PRR5L_chr11_36291288_36470204	0/0	c0020	1107	1	1	0	0	0	0	copy fasta	PRR5L	chr11	36291288	36470204
PRR5L_chr11_36291288_36470204	0/0	c0021	1107	1	1	0	0	0	0	copy fasta	PRR5L	chr11	36291288	36470204
PRR5_chr22_44697204_44742681	1/1	c0001	1167	225	36	50	100	9	28	copy fasta	PRR5	chr22	44697204	44742681
PRR5_chr22_44697204_44742681	0/0	c0002	1167	103	47	13	27	3	13	copy fasta	PRR5	chr22	44697204	44742681
PRR5_chr22_44697204_44742681	0/0	c0003	1167	51	4	1	42	0	4	copy fasta	PRR5	chr22	44697204	44742681
PRR5_chr22_44697204_44742681	0/0	c0004	1167	40	7	13	15	1	4	copy fasta	PRR5	chr22	44697204	44742681
PRR5_chr22_44697204_44742681	0/0	c0005	1167	8	0	0	8	0	0	copy fasta	PRR5	chr22	44697204	44742681
PRR5_chr22_44697204_44742681	0/0	c0006	1167	3	0	0	3	0	0	copy fasta	PRR5	chr22	44697204	44742681
PRR5_chr22_44697204_44742681	0/0	c0007	1167	2	2	0	0	0	0	copy fasta	PRR5	chr22	44697204	44742681
PRR5_chr22_44697204_44742681	0/0	c0008	1167	1	0	0	1	0	0	copy fasta	PRR5	chr22	44697204	44742681
PRR5_chr22_44697204_44742681	0/0	c0009	1167	1	0	0	1	0	0	copy fasta	PRR5	chr22	44697204	44742681
PRR5_chr22_44697204_44742681	0/0	c0010	1167	1	0	0	1	0	0	copy fasta	PRR5	chr22	44697204	44742681
PRR5_chr22_44697204_44742681	0/0	c0011	1167	1	0	0	1	0	0	copy fasta	PRR5	chr22	44697204	44742681
PRR5_chr22_44697204_44742681	0/0	c0012	1167	1	0	0	1	0	0	copy fasta	PRR5	chr22	44697204	44742681
PRR5_chr22_44697204_44742681	0/0	c0013	1153	1	0	0	1	0	0	copy fasta	PRR5	chr22	44697204	44742681
PRR5_chr22_44697204_44742681	0/0	c0014	1167	1	0	0	0	1	0	copy fasta	PRR5	chr22	44697204	44742681
PRR5_chr22_44697204_44742681	0/0	c0015	1167	1	0	0	1	0	0	copy fasta	PRR5	chr22	44697204	44742681
PRR5_chr22_44697204_44742681	0/0	c0016	1167	1	0	1	0	0	0	copy fasta	PRR5	chr22	44697204	44742681
PRR5_chr22_44697204_44742681	0/0	c0017	1167	1	0	0	0	0	1	copy fasta	PRR5	chr22	44697204	44742681
PRR7_chr5_177441814_177461286	1/1	c0001	825	330	95	78	100	12	43	copy fasta	PRR7	chr5	177441814	177461286
PRR7_chr5_177441814_177461286	0/0	c0002	825	1	0	0	0	0	1	copy fasta	PRR7	chr5	177441814	177461286
PRR7_chr5_177441814_177461286	0/0	c0003	825	1	1	0	0	0	0	copy fasta	PRR7	chr5	177441814	177461286
PRR9_chr1_153212584_153224310	1/1	c0001	351	423	85	76	200	16	44	copy fasta	PRR9	chr1	153212584	153224310
PRR9_chr1_153212584_153224310	0/0	c0002	351	9	9	0	0	0	0	copy fasta	PRR9	chr1	153212584	153224310
PRR9_chr1_153212584_153224310	0/0	c0003	351	2	0	0	2	0	0	copy fasta	PRR9	chr1	153212584	153224310
PRRC1_chr5_127512640_127560085	1/0	c0001	1338	182	52	34	70	8	17	copy fasta	PRRC1	chr5	127512640	127560085
PRRC1_chr5_127512640_127560085	0/1	c0002	1338	127	25	24	62	4	11	copy fasta	PRRC1	chr5	127512640	127560085
PRRC1_chr5_127512640_127560085	0/0	c0003	1338	10	10	0	0	0	0	copy fasta	PRRC1	chr5	127512640	127560085
PRRC1_chr5_127512640_127560085	0/0	c0004	1338	6	1	4	0	0	1	copy fasta	PRRC1	chr5	127512640	127560085
PRRC1_chr5_127512640_127560085	0/0	c0005	1338	4	0	0	4	0	0	copy fasta	PRRC1	chr5	127512640	127560085
PRRC1_chr5_127512640_127560085	0/0	c0006	1338	4	0	2	1	0	1	copy fasta	PRRC1	chr5	127512640	127560085
PRRC1_chr5_127512640_127560085	0/0	c0007	1338	2	0	0	2	0	0	copy fasta	PRRC1	chr5	127512640	127560085
PRRC1_chr5_127512640_127560085	0/0	c0008	1338	2	0	0	2	0	0	copy fasta	PRRC1	chr5	127512640	127560085
PRRC1_chr5_127512640_127560085	0/0	c0009	1338	1	0	1	0	0	0	copy fasta	PRRC1	chr5	127512640	127560085
PRRC1_chr5_127512640_127560085	0/0	c0010	1235	1	0	1	0	0	0	copy fasta	PRRC1	chr5	127512640	127560085
PRRC1_chr5_127512640_127560085	0/0	c0011	1338	1	0	0	1	0	0	copy fasta	PRRC1	chr5	127512640	127560085
PRRC2A_chr6_31615715_31642771	0/1	c0001	6474	102	1	26	53	6	15	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	c0002	6462	56	5	17	30	1	3	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	c0003	6474	42	19	8	5	4	6	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	c0004	6474	38	20	8	4	2	4	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	c0005	6474	23	11	4	7	1	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	c0006	6474	23	1	4	11	1	6	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	c0007	6474	18	11	2	5	0	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	c0008	6474	16	0	0	16	0	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	c0009	6474	13	1	0	12	0	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	c0010	6474	11	0	0	11	0	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	c0011	6474	8	1	3	1	1	2	copy fasta	PRRC2A	chr6	31615715	31642771