JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRRC2A_chr6_31615715_31642771	0/0	c0012	6474	7	1	0	3	1	2	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	c0013	6474	7	0	0	7	0	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	c0014	6474	5	3	1	0	0	1	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	c0015	6474	4	4	0	0	0	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	c0016	6474	4	1	0	3	0	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	c0017	6474	3	0	0	3	0	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	c0018	6474	3	1	1	0	0	1	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	c0019	6474	3	3	0	0	0	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	c0020	6474	2	0	0	2	0	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	c0021	6474	2	2	0	0	0	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	c0022	6462	2	0	0	2	0	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	c0023	6462	2	1	1	0	0	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	c0024	6474	2	0	2	0	0	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	c0025	6474	2	0	2	0	0	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	c0026	6474	1	0	0	1	0	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	c0027	6474	1	0	0	1	0	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	c0028	6474	1	1	0	0	0	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	c0029	6474	1	0	0	1	0	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	c0030	6474	1	0	0	1	0	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	c0031	6474	1	0	0	1	0	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	c0032	6474	1	0	0	1	0	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	c0033	6474	1	0	0	0	0	1	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	c0034	6474	1	0	1	0	0	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	c0035	6474	1	0	0	0	1	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	c0036	6474	1	1	0	0	0	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	c0037	6474	1	1	0	0	0	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	c0038	6474	1	1	0	0	0	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	c0039	6474	1	1	0	0	0	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	c0040	6474	1	0	0	0	0	1	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	c0041	6474	1	1	0	0	0	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	c0042	6474	1	1	0	0	0	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	c0043	6462	1	0	0	1	0	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	c0044	6462	1	0	0	1	0	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	c0045	6462	1	0	0	1	0	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	c0046	6474	1	0	0	1	0	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	c0047	6474	1	0	0	0	0	1	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	c0048	6474	1	0	1	0	0	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	c0049	6474	1	0	0	0	0	1	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	c0050	6474	1	1	0	0	0	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	c0051	6474	1	0	1	0	0	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	c0052	6474	1	0	0	1	0	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	c0053	6474	1	0	0	1	0	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	c0054	6474	1	0	0	1	0	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2B_chr9_131389086_131505193	0/1	c0001	6690	75	14	19	24	8	9	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	c0002	6690	27	11	9	4	1	2	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	c0003	6690	16	1	2	8	3	2	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	c0004	6690	15	2	6	0	5	2	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	c0005	6690	12	5	4	3	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	c0006	6690	7	6	1	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	c0007	6690	6	6	0	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193