JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRRC2B_chr9_131389086_131505193	0/0	c0008	6690	5	3	2	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	c0009	6690	4	4	0	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	c0010	6690	3	2	1	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	1/0	c0011	6690	3	2	0	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	c0012	6690	2	2	0	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	c0013	6690	2	2	0	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	c0014	6690	2	0	0	2	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	c0015	6690	2	0	2	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	c0016	6690	2	0	0	2	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	c0017	6690	2	0	0	2	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	c0018	6690	2	2	0	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	c0019	6690	2	0	0	2	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	c0020	6690	1	0	1	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	c0021	6690	1	1	0	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	c0022	6690	1	1	0	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	c0023	6690	1	0	0	1	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	c0024	6690	1	0	1	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	c0025	6690	1	1	0	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	c0026	6690	1	1	0	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	c0027	6690	1	0	0	0	1	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	c0028	6690	1	0	0	0	0	1	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	c0029	6690	1	1	0	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	c0030	6690	1	0	1	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	c0031	6690	1	1	0	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	c0032	6690	1	1	0	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	c0033	6690	1	1	0	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	c0034	6690	1	1	0	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	c0035	6690	1	1	0	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	c0036	6690	1	1	0	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	c0037	6690	1	0	0	1	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	c0038	6690	1	0	1	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	c0039	6690	1	1	0	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	c0040	6690	1	1	0	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	c0041	6690	1	0	1	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	c0042	6690	1	1	0	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	c0043	6690	1	0	0	0	0	1	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	c0044	6690	1	0	1	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	c0045	6690	1	0	0	1	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	c0046	6690	1	0	0	0	0	1	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2C_chr1_171480530_171598511	0/0	c0001	8697	113	30	22	46	6	9	copy fasta	PRRC2C	chr1	171480530	171598511
PRRC2C_chr1_171480530_171598511	0/0	c0002	8697	58	6	10	33	0	9	copy fasta	PRRC2C	chr1	171480530	171598511
PRRC2C_chr1_171480530_171598511	1/1	c0003	8697	56	15	15	15	3	6	copy fasta	PRRC2C	chr1	171480530	171598511
PRRC2C_chr1_171480530_171598511	0/0	c0004	8697	40	5	10	22	2	1	copy fasta	PRRC2C	chr1	171480530	171598511
PRRC2C_chr1_171480530_171598511	0/0	c0005	8697	32	8	5	7	4	8	copy fasta	PRRC2C	chr1	171480530	171598511
PRRC2C_chr1_171480530_171598511	0/0	c0006	8697	4	0	2	0	0	2	copy fasta	PRRC2C	chr1	171480530	171598511
PRRC2C_chr1_171480530_171598511	0/0	c0007	8697	3	0	0	3	0	0	copy fasta	PRRC2C	chr1	171480530	171598511
PRRC2C_chr1_171480530_171598511	0/0	c0008	8697	2	0	0	2	0	0	copy fasta	PRRC2C	chr1	171480530	171598511
PRRC2C_chr1_171480530_171598511	0/0	c0009	8697	2	0	1	0	1	0	copy fasta	PRRC2C	chr1	171480530	171598511
PRRC2C_chr1_171480530_171598511	0/0	c0010	8697	2	0	2	0	0	0	copy fasta	PRRC2C	chr1	171480530	171598511
PRRC2C_chr1_171480530_171598511	0/0	c0011	8697	2	2	0	0	0	0	copy fasta	PRRC2C	chr1	171480530	171598511