JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ART5_chr11_3633512_3646992	0/1	c0001	879	298	34	58	157	13	35	copy fasta	ART5	chr11	3633512	3646992
ART5_chr11_3633512_3646992	0/0	c0002	879	94	31	12	43	3	5	copy fasta	ART5	chr11	3633512	3646992
ART5_chr11_3633512_3646992	0/0	c0003	879	31	13	2	16	0	0	copy fasta	ART5	chr11	3633512	3646992
ART5_chr11_3633512_3646992	0/0	c0004	879	4	3	1	0	0	0	copy fasta	ART5	chr11	3633512	3646992
ART5_chr11_3633512_3646992	0/0	c0005	879	3	1	0	2	0	0	copy fasta	ART5	chr11	3633512	3646992
ART5_chr11_3633512_3646992	0/0	c0006	879	3	3	0	0	0	0	copy fasta	ART5	chr11	3633512	3646992
ART5_chr11_3633512_3646992	1/0	c0007	876	3	2	0	0	0	0	copy fasta	ART5	chr11	3633512	3646992
ART5_chr11_3633512_3646992	0/0	c0008	876	3	3	0	0	0	0	copy fasta	ART5	chr11	3633512	3646992
ART5_chr11_3633512_3646992	0/0	c0009	879	2	0	0	0	0	2	copy fasta	ART5	chr11	3633512	3646992
ART5_chr11_3633512_3646992	0/0	c0010	879	2	0	0	0	0	2	copy fasta	ART5	chr11	3633512	3646992
ART5_chr11_3633512_3646992	0/0	c0011	879	1	1	0	0	0	0	copy fasta	ART5	chr11	3633512	3646992
ART5_chr11_3633512_3646992	0/0	c0012	879	1	0	1	0	0	0	copy fasta	ART5	chr11	3633512	3646992
ART5_chr11_3633512_3646992	0/0	c0013	879	1	0	0	1	0	0	copy fasta	ART5	chr11	3633512	3646992
ART5_chr11_3633512_3646992	0/0	c0014	879	1	1	0	0	0	0	copy fasta	ART5	chr11	3633512	3646992
ART5_chr11_3633512_3646992	0/0	c0015	879	1	0	0	1	0	0	copy fasta	ART5	chr11	3633512	3646992
ART5_chr11_3633512_3646992	0/0	c0016	879	1	1	0	0	0	0	copy fasta	ART5	chr11	3633512	3646992
ART5_chr11_3633512_3646992	0/0	c0017	879	1	1	0	0	0	0	copy fasta	ART5	chr11	3633512	3646992
ART5_chr11_3633512_3646992	0/0	c0018	879	1	0	1	0	0	0	copy fasta	ART5	chr11	3633512	3646992
ART5_chr11_3633512_3646992	0/0	c0019	879	1	1	0	0	0	0	copy fasta	ART5	chr11	3633512	3646992
ART5_chr11_3633512_3646992	0/0	c0020	876	1	1	0	0	0	0	copy fasta	ART5	chr11	3633512	3646992
ART5_chr11_3633512_3646992	0/0	c0021	876	1	0	1	0	0	0	copy fasta	ART5	chr11	3633512	3646992
ARTN_chr1_43928801_43942240	0/1	c0001	663	288	60	54	128	10	35	copy fasta	ARTN	chr1	43928801	43942240
ARTN_chr1_43928801_43942240	1/0	c0002	663	97	26	6	58	2	4	copy fasta	ARTN	chr1	43928801	43942240
ARTN_chr1_43928801_43942240	0/0	c0003	663	8	8	0	0	0	0	copy fasta	ARTN	chr1	43928801	43942240
ARTN_chr1_43928801_43942240	0/0	c0004	663	1	0	0	0	0	1	copy fasta	ARTN	chr1	43928801	43942240
ARV1_chr1_230974094_231005733	1/1	c0001	816	395	82	70	182	16	43	copy fasta	ARV1	chr1	230974094	231005733
ARV1_chr1_230974094_231005733	0/0	c0002	816	3	3	0	0	0	0	copy fasta	ARV1	chr1	230974094	231005733
ARV1_chr1_230974094_231005733	0/0	c0003	816	2	1	0	0	0	1	copy fasta	ARV1	chr1	230974094	231005733
ARV1_chr1_230974094_231005733	0/0	c0004	816	2	2	0	0	0	0	copy fasta	ARV1	chr1	230974094	231005733
ARVCF_chr22_19964896_20021823	0/0	c0001	2889	113	19	18	63	6	7	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	c0002	2889	74	8	20	36	2	8	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	1/0	c0003	2889	42	0	7	28	3	3	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/1	c0004	2889	34	13	14	0	1	5	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	c0005	2889	23	23	0	0	0	0	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	c0006	2889	14	2	6	2	0	4	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	c0007	2889	9	0	0	7	0	2	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	c0008	2889	8	4	3	0	0	1	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	c0009	2889	7	6	0	1	0	0	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	c0010	2889	4	4	0	0	0	0	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	c0011	2889	3	3	0	0	0	0	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	c0012	2889	3	3	0	0	0	0	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	c0013	2889	2	2	0	0	0	0	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	c0014	2889	2	0	0	2	0	0	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	c0015	2889	2	0	0	2	0	0	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	c0016	2889	2	1	0	0	1	0	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	c0017	2889	2	0	0	2	0	0	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	c0018	2889	2	0	0	2	0	0	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	c0019	2889	2	0	0	2	0	0	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	c0020	2889	2	0	0	2	0	0	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	c0021	2889	2	2	0	0	0	0	copy fasta	ARVCF	chr22	19964896	20021823