JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRRC2C_chr1_171480530_171598511	0/0	c0012	8697	2	0	2	0	0	0	copy fasta	PRRC2C	chr1	171480530	171598511
PRRC2C_chr1_171480530_171598511	0/0	c0013	8697	1	0	0	0	0	1	copy fasta	PRRC2C	chr1	171480530	171598511
PRRC2C_chr1_171480530_171598511	0/0	c0014	8697	1	1	0	0	0	0	copy fasta	PRRC2C	chr1	171480530	171598511
PRRC2C_chr1_171480530_171598511	0/0	c0015	8697	1	1	0	0	0	0	copy fasta	PRRC2C	chr1	171480530	171598511
PRRC2C_chr1_171480530_171598511	0/0	c0016	8697	1	0	0	1	0	0	copy fasta	PRRC2C	chr1	171480530	171598511
PRRC2C_chr1_171480530_171598511	0/0	c0017	8697	1	1	0	0	0	0	copy fasta	PRRC2C	chr1	171480530	171598511
PRRC2C_chr1_171480530_171598511	0/0	c0018	8697	1	1	0	0	0	0	copy fasta	PRRC2C	chr1	171480530	171598511
PRRC2C_chr1_171480530_171598511	0/0	c0019	8697	1	1	0	0	0	0	copy fasta	PRRC2C	chr1	171480530	171598511
PRRC2C_chr1_171480530_171598511	0/0	c0020	8697	1	1	0	0	0	0	copy fasta	PRRC2C	chr1	171480530	171598511
PRRC2C_chr1_171480530_171598511	0/0	c0021	8697	1	1	0	0	0	0	copy fasta	PRRC2C	chr1	171480530	171598511
PRRC2C_chr1_171480530_171598511	0/0	c0022	8697	1	0	0	1	0	0	copy fasta	PRRC2C	chr1	171480530	171598511
PRRC2C_chr1_171480530_171598511	0/0	c0023	8697	1	0	1	0	0	0	copy fasta	PRRC2C	chr1	171480530	171598511
PRRC2C_chr1_171480530_171598511	0/0	c0024	8697	1	0	0	1	0	0	copy fasta	PRRC2C	chr1	171480530	171598511
PRRC2C_chr1_171480530_171598511	0/0	c0025	8697	1	1	0	0	0	0	copy fasta	PRRC2C	chr1	171480530	171598511
PRRC2C_chr1_171480530_171598511	0/0	c0026	8697	1	1	0	0	0	0	copy fasta	PRRC2C	chr1	171480530	171598511
PRRC2C_chr1_171480530_171598511	0/0	c0027	8697	1	0	0	1	0	0	copy fasta	PRRC2C	chr1	171480530	171598511
PRRC2C_chr1_171480530_171598511	0/0	c0028	8697	1	1	0	0	0	0	copy fasta	PRRC2C	chr1	171480530	171598511
PRRC2C_chr1_171480530_171598511	0/0	c0029	8697	1	1	0	0	0	0	copy fasta	PRRC2C	chr1	171480530	171598511
PRRC2C_chr1_171480530_171598511	0/0	c0030	8697	1	0	1	0	0	0	copy fasta	PRRC2C	chr1	171480530	171598511
PRRC2C_chr1_171480530_171598511	0/0	c0031	8697	1	0	1	0	0	0	copy fasta	PRRC2C	chr1	171480530	171598511
PRRC2C_chr1_171480530_171598511	0/0	c0032	8697	1	1	0	0	0	0	copy fasta	PRRC2C	chr1	171480530	171598511
PRRG1_chrX_37344364_37462291	1/1	c0001	657	211	69	29	80	7	24	copy fasta	PRRG1	chrX	37344364	37462291
PRRG1_chrX_37344364_37462291	0/0	c0002	657	2	2	0	0	0	0	copy fasta	PRRG1	chrX	37344364	37462291
PRRG1_chrX_37344364_37462291	0/0	c0003	657	1	1	0	0	0	0	copy fasta	PRRG1	chrX	37344364	37462291
PRRG1_chrX_37344364_37462291	0/0	c0004	658	1	0	0	0	0	1	copy fasta	PRRG1	chrX	37344364	37462291
PRRG1_chrX_37344364_37462291	0/0	c0005	657	1	0	0	0	0	1	copy fasta	PRRG1	chrX	37344364	37462291
PRRG2_chr19_49576316_49596004	1/0	c0001	609	197	42	40	86	8	20	copy fasta	PRRG2	chr19	49576316	49596004
PRRG2_chr19_49576316_49596004	0/1	c0002	609	120	47	19	37	4	12	copy fasta	PRRG2	chr19	49576316	49596004
PRRG2_chr19_49576316_49596004	0/0	c0003	615	18	7	5	0	0	6	copy fasta	PRRG2	chr19	49576316	49596004
PRRG2_chr19_49576316_49596004	0/0	c0004	609	9	1	4	0	2	2	copy fasta	PRRG2	chr19	49576316	49596004
PRRG2_chr19_49576316_49596004	0/0	c0005	609	1	0	0	1	0	0	copy fasta	PRRG2	chr19	49576316	49596004
PRRG2_chr19_49576316_49596004	0/0	c0006	609	1	1	0	0	0	0	copy fasta	PRRG2	chr19	49576316	49596004
PRRG3_chrX_151690458_151710924	0/1	c0001	696	298	56	56	145	12	28	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	1/0	c0002	696	20	14	4	0	0	1	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	c0003	696	3	3	0	0	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	c0004	696	3	3	0	0	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	c0005	696	3	1	0	0	0	2	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	c0006	697	2	0	2	0	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	c0007	696	1	0	0	0	1	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	c0008	697	1	0	0	1	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	c0009	696	1	1	0	0	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	c0010	696	1	1	0	0	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	c0011	696	1	1	0	0	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	c0012	696	1	0	0	0	0	1	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	c0013	696	1	0	0	1	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG4_chr11_32824927_32863120	1/0	c0001	681	198	57	33	84	7	16	copy fasta	PRRG4	chr11	32824927	32863120
PRRG4_chr11_32824927_32863120	0/1	c0002	681	169	30	39	79	3	17	copy fasta	PRRG4	chr11	32824927	32863120
PRRG4_chr11_32824927_32863120	0/0	c0003	681	15	6	3	0	3	3	copy fasta	PRRG4	chr11	32824927	32863120
PRRG4_chr11_32824927_32863120	0/0	c0004	681	12	2	3	3	1	3	copy fasta	PRRG4	chr11	32824927	32863120
PRRG4_chr11_32824927_32863120	0/0	c0005	681	3	0	0	0	0	3	copy fasta	PRRG4	chr11	32824927	32863120