JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRRG4_chr11_32824927_32863120	0/0	c0006	681	2	2	0	0	0	0	copy fasta	PRRG4	chr11	32824927	32863120
PRRG4_chr11_32824927_32863120	0/0	c0007	681	1	1	0	0	0	0	copy fasta	PRRG4	chr11	32824927	32863120
PRRG4_chr11_32824927_32863120	0/0	c0008	681	1	0	0	1	0	0	copy fasta	PRRG4	chr11	32824927	32863120
PRRG4_chr11_32824927_32863120	0/0	c0009	681	1	0	0	1	0	0	copy fasta	PRRG4	chr11	32824927	32863120
PRRT1B_chr9_131540523_131564815	0/1	c0001	792	160	34	24	81	4	16	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	1/0	c0002	792	139	2	29	79	8	20	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	c0003	792	77	37	13	21	3	3	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	c0004	792	19	1	0	18	0	0	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	c0005	792	18	0	4	13	0	1	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	c0006	807	11	10	1	0	0	0	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	c0007	792	9	2	2	1	0	4	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	c0008	792	7	0	2	0	2	3	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	c0009	807	3	3	0	0	0	0	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	c0010	792	2	2	0	0	0	0	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	c0011	792	2	1	1	0	0	0	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	c0012	792	1	1	0	0	0	0	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	c0013	792	1	0	1	0	0	0	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	c0014	792	1	0	0	0	0	1	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	c0015	782	1	0	0	0	0	1	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	c0016	792	1	1	0	0	0	0	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	c0017	792	1	1	0	0	0	0	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	c0018	792	1	0	0	0	1	0	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	c0019	792	1	1	0	0	0	0	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	c0020	792	1	0	1	0	0	0	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	c0021	792	1	0	0	0	0	1	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	c0022	792	1	0	0	1	0	0	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1_chr6_32143363_32156939	0/1	c0001	921	418	93	81	181	18	44	copy fasta	PRRT1	chr6	32143363	32156939
PRRT1_chr6_32143363_32156939	0/0	c0002	921	1	0	0	1	0	0	copy fasta	PRRT1	chr6	32143363	32156939
PRRT1_chr6_32143363_32156939	0/0	c0003	921	1	0	1	0	0	0	copy fasta	PRRT1	chr6	32143363	32156939
PRRT1_chr6_32143363_32156939	0/0	c0004	921	1	1	0	0	0	0	copy fasta	PRRT1	chr6	32143363	32156939
PRRT2_chr16_29807193_29820881	0/1	c0001	1023	268	74	45	113	15	20	copy fasta	PRRT2	chr16	29807193	29820881
PRRT2_chr16_29807193_29820881	0/0	c0002	1023	26	0	2	24	0	0	copy fasta	PRRT2	chr16	29807193	29820881
PRRT2_chr16_29807193_29820881	0/0	c0003	1024	16	0	4	5	0	7	copy fasta	PRRT2	chr16	29807193	29820881
PRRT2_chr16_29807193_29820881	0/0	c0004	1024	3	0	0	2	0	1	copy fasta	PRRT2	chr16	29807193	29820881
PRRT2_chr16_29807193_29820881	0/0	c0005	1023	2	0	0	2	0	0	copy fasta	PRRT2	chr16	29807193	29820881
PRRT2_chr16_29807193_29820881	1/0	c0006	1023	2	1	0	0	0	0	copy fasta	PRRT2	chr16	29807193	29820881
PRRT2_chr16_29807193_29820881	0/0	c0007	1024	1	1	0	0	0	0	copy fasta	PRRT2	chr16	29807193	29820881
PRRT2_chr16_29807193_29820881	0/0	c0008	1023	1	1	0	0	0	0	copy fasta	PRRT2	chr16	29807193	29820881
PRRT2_chr16_29807193_29820881	0/0	c0009	1023	1	1	0	0	0	0	copy fasta	PRRT2	chr16	29807193	29820881
PRRT2_chr16_29807193_29820881	0/0	c0010	1023	1	0	0	0	1	0	copy fasta	PRRT2	chr16	29807193	29820881
PRRT2_chr16_29807193_29820881	0/0	c0011	1023	1	0	1	0	0	0	copy fasta	PRRT2	chr16	29807193	29820881
PRRT3_chr3_9940542_9957408	0/1	c0001	2946	164	11	34	93	7	18	copy fasta	PRRT3	chr3	9940542	9957408
PRRT3_chr3_9940542_9957408	0/0	c0002	2946	146	60	34	39	3	10	copy fasta	PRRT3	chr3	9940542	9957408
PRRT3_chr3_9940542_9957408	1/0	c0003	2946	17	0	2	8	2	4	copy fasta	PRRT3	chr3	9940542	9957408
PRRT3_chr3_9940542_9957408	0/0	c0004	2946	10	1	2	6	0	1	copy fasta	PRRT3	chr3	9940542	9957408
PRRT3_chr3_9940542_9957408	0/0	c0005	2946	9	8	1	0	0	0	copy fasta	PRRT3	chr3	9940542	9957408
PRRT3_chr3_9940542_9957408	0/0	c0006	2946	9	9	0	0	0	0	copy fasta	PRRT3	chr3	9940542	9957408
PRRT3_chr3_9940542_9957408	0/0	c0007	2946	6	0	0	6	0	0	copy fasta	PRRT3	chr3	9940542	9957408
PRRT3_chr3_9940542_9957408	0/0	c0008	2946	4	4	0	0	0	0	copy fasta	PRRT3	chr3	9940542	9957408
PRRT3_chr3_9940542_9957408	0/0	c0009	2946	3	0	0	0	0	3	copy fasta	PRRT3	chr3	9940542	9957408