JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRRT3_chr3_9940542_9957408	0/0	c0010	2946	2	1	0	0	0	1	copy fasta	PRRT3	chr3	9940542	9957408
PRRT3_chr3_9940542_9957408	0/0	c0011	2946	2	0	1	0	0	1	copy fasta	PRRT3	chr3	9940542	9957408
PRRT3_chr3_9940542_9957408	0/0	c0012	2946	1	0	1	0	0	0	copy fasta	PRRT3	chr3	9940542	9957408
PRRT3_chr3_9940542_9957408	0/0	c0013	2946	1	0	0	1	0	0	copy fasta	PRRT3	chr3	9940542	9957408
PRRT3_chr3_9940542_9957408	0/0	c0014	2946	1	1	0	0	0	0	copy fasta	PRRT3	chr3	9940542	9957408
PRRT3_chr3_9940542_9957408	0/0	c0015	2946	1	1	0	0	0	0	copy fasta	PRRT3	chr3	9940542	9957408
PRRT3_chr3_9940542_9957408	0/0	c0016	2946	1	0	1	0	0	0	copy fasta	PRRT3	chr3	9940542	9957408
PRRT3_chr3_9940542_9957408	0/0	c0017	2946	1	0	0	1	0	0	copy fasta	PRRT3	chr3	9940542	9957408
PRRT4_chr7_128345325_128366690	0/0	c0001	2700	124	11	41	48	9	15	copy fasta	PRRT4	chr7	128345325	128366690
PRRT4_chr7_128345325_128366690	1/0	c0002	2700	114	18	7	84	3	1	copy fasta	PRRT4	chr7	128345325	128366690
PRRT4_chr7_128345325_128366690	0/0	c0003	2700	86	24	15	29	2	16	copy fasta	PRRT4	chr7	128345325	128366690
PRRT4_chr7_128345325_128366690	0/0	c0004	2700	39	2	8	22	3	4	copy fasta	PRRT4	chr7	128345325	128366690
PRRT4_chr7_128345325_128366690	0/0	c0005	2700	27	14	2	11	0	0	copy fasta	PRRT4	chr7	128345325	128366690
PRRT4_chr7_128345325_128366690	0/0	c0006	2700	10	9	0	1	0	0	copy fasta	PRRT4	chr7	128345325	128366690
PRRT4_chr7_128345325_128366690	0/0	c0007	2700	7	2	3	2	0	0	copy fasta	PRRT4	chr7	128345325	128366690
PRRT4_chr7_128345325_128366690	0/0	c0008	2700	5	0	0	5	0	0	copy fasta	PRRT4	chr7	128345325	128366690
PRRT4_chr7_128345325_128366690	0/0	c0009	2700	4	1	1	1	0	1	copy fasta	PRRT4	chr7	128345325	128366690
PRRT4_chr7_128345325_128366690	0/0	c0010	2700	3	0	0	3	0	0	copy fasta	PRRT4	chr7	128345325	128366690
PRRT4_chr7_128345325_128366690	0/0	c0011	2700	3	2	1	0	0	0	copy fasta	PRRT4	chr7	128345325	128366690
PRRT4_chr7_128345325_128366690	0/0	c0012	2700	3	0	1	0	1	1	copy fasta	PRRT4	chr7	128345325	128366690
PRRT4_chr7_128345325_128366690	0/0	c0013	2700	2	2	0	0	0	0	copy fasta	PRRT4	chr7	128345325	128366690
PRRT4_chr7_128345325_128366690	0/0	c0014	2700	2	0	0	2	0	0	copy fasta	PRRT4	chr7	128345325	128366690
PRRT4_chr7_128345325_128366690	0/0	c0015	2700	2	1	0	0	0	1	copy fasta	PRRT4	chr7	128345325	128366690
PRRT4_chr7_128345325_128366690	0/0	c0016	2700	2	2	0	0	0	0	copy fasta	PRRT4	chr7	128345325	128366690
PRRT4_chr7_128345325_128366690	0/1	c0017	2700	1	0	0	0	0	0	copy fasta	PRRT4	chr7	128345325	128366690
PRRT4_chr7_128345325_128366690	0/0	c0018	2700	1	0	0	1	0	0	copy fasta	PRRT4	chr7	128345325	128366690
PRRT4_chr7_128345325_128366690	0/0	c0019	2700	1	1	0	0	0	0	copy fasta	PRRT4	chr7	128345325	128366690
PRRT4_chr7_128345325_128366690	0/0	c0020	2700	1	1	0	0	0	0	copy fasta	PRRT4	chr7	128345325	128366690
PRRT4_chr7_128345325_128366690	0/0	c0021	2700	1	0	1	0	0	0	copy fasta	PRRT4	chr7	128345325	128366690
PRRT4_chr7_128345325_128366690	0/0	c0022	2700	1	0	1	0	0	0	copy fasta	PRRT4	chr7	128345325	128366690
PRRT4_chr7_128345325_128366690	0/0	c0023	2700	1	1	0	0	0	0	copy fasta	PRRT4	chr7	128345325	128366690
PRRT4_chr7_128345325_128366690	0/0	c0024	2700	1	0	0	0	0	1	copy fasta	PRRT4	chr7	128345325	128366690
PRRT4_chr7_128345325_128366690	0/0	c0025	2700	1	0	0	1	0	0	copy fasta	PRRT4	chr7	128345325	128366690
PRRT4_chr7_128345325_128366690	0/0	c0026	2700	1	0	0	1	0	0	copy fasta	PRRT4	chr7	128345325	128366690
PRRT4_chr7_128345325_128366690	0/0	c0027	2700	1	0	1	0	0	0	copy fasta	PRRT4	chr7	128345325	128366690
PRRT4_chr7_128345325_128366690	0/0	c0028	2700	1	1	0	0	0	0	copy fasta	PRRT4	chr7	128345325	128366690
PRRT4_chr7_128345325_128366690	0/0	c0029	2700	1	0	0	1	0	0	copy fasta	PRRT4	chr7	128345325	128366690
PRRT4_chr7_128345325_128366690	0/0	c0030	2700	1	0	0	1	0	0	copy fasta	PRRT4	chr7	128345325	128366690
PRRT4_chr7_128345325_128366690	0/0	c0031	2700	1	0	0	1	0	0	copy fasta	PRRT4	chr7	128345325	128366690
PRRX1_chr1_170659131_170744421	1/1	c0001	738	351	79	68	158	10	34	copy fasta	PRRX1	chr1	170659131	170744421
PRRX1_chr1_170659131_170744421	0/0	c0002	738	3	3	0	0	0	0	copy fasta	PRRX1	chr1	170659131	170744421
PRRX1_chr1_170659131_170744421	0/0	c0003	738	1	1	0	0	0	0	copy fasta	PRRX1	chr1	170659131	170744421
PRRX1_chr1_170659131_170744421	0/0	c0004	738	1	1	0	0	0	0	copy fasta	PRRX1	chr1	170659131	170744421
PRRX2_chr9_129660647_129727674	1/1	c0001	762	355	90	64	139	18	42	copy fasta	PRRX2	chr9	129660647	129727674
PRRX2_chr9_129660647_129727674	0/0	c0002	762	2	0	2	0	0	0	copy fasta	PRRX2	chr9	129660647	129727674
PRRX2_chr9_129660647_129727674	0/0	c0003	762	1	0	0	1	0	0	copy fasta	PRRX2	chr9	129660647	129727674
PRSS12_chr4_118275038_118358003	1/1	c0001	2628	89	29	6	47	0	5	copy fasta	PRSS12	chr4	118275038	118358003
PRSS12_chr4_118275038_118358003	0/0	c0002	2628	83	17	21	37	4	4	copy fasta	PRSS12	chr4	118275038	118358003
PRSS12_chr4_118275038_118358003	0/0	c0003	2628	57	3	19	21	3	11	copy fasta	PRSS12	chr4	118275038	118358003
PRSS12_chr4_118275038_118358003	0/0	c0004	2628	56	12	3	35	0	6	copy fasta	PRSS12	chr4	118275038	118358003