JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRSS12_chr4_118275038_118358003	0/0	c0005	2628	41	7	4	16	2	12	copy fasta	PRSS12	chr4	118275038	118358003
PRSS12_chr4_118275038_118358003	0/0	c0006	2628	8	0	1	7	0	0	copy fasta	PRSS12	chr4	118275038	118358003
PRSS12_chr4_118275038_118358003	0/0	c0007	2628	4	1	3	0	0	0	copy fasta	PRSS12	chr4	118275038	118358003
PRSS12_chr4_118275038_118358003	0/0	c0008	2628	4	0	0	4	0	0	copy fasta	PRSS12	chr4	118275038	118358003
PRSS12_chr4_118275038_118358003	0/0	c0009	2628	4	4	0	0	0	0	copy fasta	PRSS12	chr4	118275038	118358003
PRSS12_chr4_118275038_118358003	0/0	c0010	2628	3	2	1	0	0	0	copy fasta	PRSS12	chr4	118275038	118358003
PRSS12_chr4_118275038_118358003	0/0	c0011	2628	2	2	0	0	0	0	copy fasta	PRSS12	chr4	118275038	118358003
PRSS12_chr4_118275038_118358003	0/0	c0012	2628	2	0	2	0	0	0	copy fasta	PRSS12	chr4	118275038	118358003
PRSS12_chr4_118275038_118358003	0/0	c0013	2628	2	2	0	0	0	0	copy fasta	PRSS12	chr4	118275038	118358003
PRSS12_chr4_118275038_118358003	0/0	c0014	2628	1	1	0	0	0	0	copy fasta	PRSS12	chr4	118275038	118358003
PRSS12_chr4_118275038_118358003	0/0	c0015	2628	1	0	0	0	0	1	copy fasta	PRSS12	chr4	118275038	118358003
PRSS12_chr4_118275038_118358003	0/0	c0016	2628	1	0	0	0	0	1	copy fasta	PRSS12	chr4	118275038	118358003
PRSS12_chr4_118275038_118358003	0/0	c0017	2628	1	0	0	1	0	0	copy fasta	PRSS12	chr4	118275038	118358003
PRSS12_chr4_118275038_118358003	0/0	c0018	2628	1	0	0	1	0	0	copy fasta	PRSS12	chr4	118275038	118358003
PRSS12_chr4_118275038_118358003	0/0	c0019	2628	1	0	0	0	1	0	copy fasta	PRSS12	chr4	118275038	118358003
PRSS12_chr4_118275038_118358003	0/0	c0020	2628	1	0	0	1	0	0	copy fasta	PRSS12	chr4	118275038	118358003
PRSS12_chr4_118275038_118358003	0/0	c0021	2628	1	1	0	0	0	0	copy fasta	PRSS12	chr4	118275038	118358003
PRSS12_chr4_118275038_118358003	0/0	c0022	2628	1	1	0	0	0	0	copy fasta	PRSS12	chr4	118275038	118358003
PRSS16_chr6_27242701_27261620	1/0	c0001	1545	290	71	53	121	11	33	copy fasta	PRSS16	chr6	27242701	27261620
PRSS16_chr6_27242701_27261620	0/0	c0002	1530	33	10	14	3	1	5	copy fasta	PRSS16	chr6	27242701	27261620
PRSS16_chr6_27242701_27261620	0/1	c0003	1545	23	13	2	3	1	3	copy fasta	PRSS16	chr6	27242701	27261620
PRSS16_chr6_27242701_27261620	0/0	c0004	1545	20	0	4	15	1	0	copy fasta	PRSS16	chr6	27242701	27261620
PRSS16_chr6_27242701_27261620	0/0	c0005	1545	1	1	0	0	0	0	copy fasta	PRSS16	chr6	27242701	27261620
PRSS16_chr6_27242701_27261620	0/0	c0006	1545	1	1	0	0	0	0	copy fasta	PRSS16	chr6	27242701	27261620
PRSS16_chr6_27242701_27261620	0/0	c0007	1545	1	0	0	0	0	1	copy fasta	PRSS16	chr6	27242701	27261620
PRSS16_chr6_27242701_27261620	0/0	c0008	1545	1	0	1	0	0	0	copy fasta	PRSS16	chr6	27242701	27261620
PRSS1_chr7_142744472_142758072	0/1	c0001	744	211	56	30	85	5	34	copy fasta	PRSS1	chr7	142744472	142758072
PRSS1_chr7_142744472_142758072	0/0	c0002	744	145	36	38	60	7	4	copy fasta	PRSS1	chr7	142744472	142758072
PRSS1_chr7_142744472_142758072	0/0	c0003	744	2	2	0	0	0	0	copy fasta	PRSS1	chr7	142744472	142758072
PRSS1_chr7_142744472_142758072	0/0	c0004	744	2	0	0	2	0	0	copy fasta	PRSS1	chr7	142744472	142758072
PRSS1_chr7_142744472_142758072	0/0	c0005	744	2	0	0	2	0	0	copy fasta	PRSS1	chr7	142744472	142758072
PRSS1_chr7_142744472_142758072	0/0	c0006	744	2	2	0	0	0	0	copy fasta	PRSS1	chr7	142744472	142758072
PRSS1_chr7_142744472_142758072	0/0	c0007	744	1	0	0	1	0	0	copy fasta	PRSS1	chr7	142744472	142758072
PRSS21_chr16_2812237_2826719	0/0	c0001	945	148	48	38	38	8	16	copy fasta	PRSS21	chr16	2812237	2826719
PRSS21_chr16_2812237_2826719	0/0	c0002	945	113	9	14	72	6	12	copy fasta	PRSS21	chr16	2812237	2826719
PRSS21_chr16_2812237_2826719	1/1	c0003	945	100	23	17	50	1	7	copy fasta	PRSS21	chr16	2812237	2826719
PRSS21_chr16_2812237_2826719	0/0	c0004	945	20	0	3	17	0	0	copy fasta	PRSS21	chr16	2812237	2826719
PRSS21_chr16_2812237_2826719	0/0	c0005	945	12	12	0	0	0	0	copy fasta	PRSS21	chr16	2812237	2826719
PRSS21_chr16_2812237_2826719	0/0	c0006	945	9	1	3	3	1	1	copy fasta	PRSS21	chr16	2812237	2826719
PRSS21_chr16_2812237_2826719	0/0	c0007	945	9	0	1	8	0	0	copy fasta	PRSS21	chr16	2812237	2826719
PRSS21_chr16_2812237_2826719	0/0	c0008	945	2	0	2	0	0	0	copy fasta	PRSS21	chr16	2812237	2826719
PRSS21_chr16_2812237_2826719	0/0	c0009	945	2	2	0	0	0	0	copy fasta	PRSS21	chr16	2812237	2826719
PRSS21_chr16_2812237_2826719	0/0	c0010	945	2	2	0	0	0	0	copy fasta	PRSS21	chr16	2812237	2826719
PRSS21_chr16_2812237_2826719	0/0	c0011	945	2	0	0	2	0	0	copy fasta	PRSS21	chr16	2812237	2826719
PRSS21_chr16_2812237_2826719	0/0	c0012	945	1	1	0	0	0	0	copy fasta	PRSS21	chr16	2812237	2826719
PRSS21_chr16_2812237_2826719	0/0	c0013	957	1	0	0	1	0	0	copy fasta	PRSS21	chr16	2812237	2826719
PRSS21_chr16_2812237_2826719	0/0	c0014	945	1	0	0	0	0	1	copy fasta	PRSS21	chr16	2812237	2826719
PRSS21_chr16_2812237_2826719	0/0	c0015	945	1	0	0	1	0	0	copy fasta	PRSS21	chr16	2812237	2826719
PRSS21_chr16_2812237_2826719	0/0	c0016	945	1	0	0	1	0	0	copy fasta	PRSS21	chr16	2812237	2826719
PRSS21_chr16_2812237_2826719	0/0	c0017	945	1	1	0	0	0	0	copy fasta	PRSS21	chr16	2812237	2826719