JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRSS21_chr16_2812237_2826719	0/0	c0018	945	1	0	0	0	0	1	copy fasta	PRSS21	chr16	2812237	2826719
PRSS21_chr16_2812237_2826719	0/0	c0019	945	1	1	0	0	0	0	copy fasta	PRSS21	chr16	2812237	2826719
PRSS21_chr16_2812237_2826719	0/0	c0020	945	1	0	0	1	0	0	copy fasta	PRSS21	chr16	2812237	2826719
PRSS21_chr16_2812237_2826719	0/0	c0021	933	1	0	0	0	0	1	copy fasta	PRSS21	chr16	2812237	2826719
PRSS21_chr16_2812237_2826719	0/0	c0022	933	1	0	0	0	0	1	copy fasta	PRSS21	chr16	2812237	2826719
PRSS22_chr16_2847730_2863170	1/1	c0001	954	406	97	83	177	15	32	copy fasta	PRSS22	chr16	2847730	2863170
PRSS22_chr16_2847730_2863170	0/0	c0002	954	2	0	1	0	1	0	copy fasta	PRSS22	chr16	2847730	2863170
PRSS22_chr16_2847730_2863170	0/0	c0003	954	1	1	0	0	0	0	copy fasta	PRSS22	chr16	2847730	2863170
PRSS22_chr16_2847730_2863170	0/0	c0004	954	1	0	0	1	0	0	copy fasta	PRSS22	chr16	2847730	2863170
PRSS22_chr16_2847730_2863170	0/0	c0005	954	1	1	0	0	0	0	copy fasta	PRSS22	chr16	2847730	2863170
PRSS22_chr16_2847730_2863170	0/0	c0006	954	1	1	0	0	0	0	copy fasta	PRSS22	chr16	2847730	2863170
PRSS23_chr11_86795542_86816233	1/1	c0001	1152	350	78	60	153	16	41	copy fasta	PRSS23	chr11	86795542	86816233
PRSS23_chr11_86795542_86816233	0/0	c0002	1152	1	0	0	1	0	0	copy fasta	PRSS23	chr11	86795542	86816233
PRSS23_chr11_86795542_86816233	0/0	c0003	1152	1	1	0	0	0	0	copy fasta	PRSS23	chr11	86795542	86816233
PRSS23_chr11_86795542_86816233	0/0	c0004	1152	1	0	0	0	0	1	copy fasta	PRSS23	chr11	86795542	86816233
PRSS23_chr11_86795542_86816233	0/0	c0005	1152	1	1	0	0	0	0	copy fasta	PRSS23	chr11	86795542	86816233
PRSS27_chr16_2707422_2725224	1/1	c0001	873	332	65	73	133	18	41	copy fasta	PRSS27	chr16	2707422	2725224
PRSS27_chr16_2707422_2725224	0/0	c0002	873	20	19	1	0	0	0	copy fasta	PRSS27	chr16	2707422	2725224
PRSS27_chr16_2707422_2725224	0/0	c0003	873	6	0	0	6	0	0	copy fasta	PRSS27	chr16	2707422	2725224
PRSS27_chr16_2707422_2725224	0/0	c0004	873	4	4	0	0	0	0	copy fasta	PRSS27	chr16	2707422	2725224
PRSS27_chr16_2707422_2725224	0/0	c0005	873	3	0	0	3	0	0	copy fasta	PRSS27	chr16	2707422	2725224
PRSS27_chr16_2707422_2725224	0/0	c0006	873	3	3	0	0	0	0	copy fasta	PRSS27	chr16	2707422	2725224
PRSS27_chr16_2707422_2725224	0/0	c0007	873	2	2	0	0	0	0	copy fasta	PRSS27	chr16	2707422	2725224
PRSS27_chr16_2707422_2725224	0/0	c0008	873	2	0	0	2	0	0	copy fasta	PRSS27	chr16	2707422	2725224
PRSS27_chr16_2707422_2725224	0/0	c0009	873	2	2	0	0	0	0	copy fasta	PRSS27	chr16	2707422	2725224
PRSS27_chr16_2707422_2725224	0/0	c0010	873	1	0	0	1	0	0	copy fasta	PRSS27	chr16	2707422	2725224
PRSS27_chr16_2707422_2725224	0/0	c0011	873	1	1	0	0	0	0	copy fasta	PRSS27	chr16	2707422	2725224
PRSS27_chr16_2707422_2725224	0/0	c0012	873	1	1	0	0	0	0	copy fasta	PRSS27	chr16	2707422	2725224
PRSS27_chr16_2707422_2725224	0/0	c0013	873	1	1	0	0	0	0	copy fasta	PRSS27	chr16	2707422	2725224
PRSS27_chr16_2707422_2725224	0/0	c0014	873	1	0	0	0	0	1	copy fasta	PRSS27	chr16	2707422	2725224
PRSS27_chr16_2707422_2725224	0/0	c0015	873	1	1	0	0	0	0	copy fasta	PRSS27	chr16	2707422	2725224
PRSS27_chr16_2707422_2725224	0/0	c0016	873	1	0	0	1	0	0	copy fasta	PRSS27	chr16	2707422	2725224
PRSS27_chr16_2707422_2725224	0/0	c0017	873	1	1	0	0	0	0	copy fasta	PRSS27	chr16	2707422	2725224
PRSS2_chr7_142765970_142779560	0/1	c0001	744	202	50	30	92	4	25	copy fasta	PRSS2	chr7	142765970	142779560
PRSS2_chr7_142765970_142779560	0/0	c0002	744	128	36	32	51	4	5	copy fasta	PRSS2	chr7	142765970	142779560
PRSS2_chr7_142765970_142779560	0/0	c0003	744	11	1	6	1	1	2	copy fasta	PRSS2	chr7	142765970	142779560
PRSS2_chr7_142765970_142779560	0/0	c0004	744	8	0	2	4	1	1	copy fasta	PRSS2	chr7	142765970	142779560
PRSS2_chr7_142765970_142779560	0/0	c0005	744	6	5	1	0	0	0	copy fasta	PRSS2	chr7	142765970	142779560
PRSS2_chr7_142765970_142779560	0/0	c0006	744	2	0	2	0	0	0	copy fasta	PRSS2	chr7	142765970	142779560
PRSS2_chr7_142765970_142779560	0/0	c0007	744	2	2	0	0	0	0	copy fasta	PRSS2	chr7	142765970	142779560
PRSS2_chr7_142765970_142779560	0/0	c0008	744	2	2	0	0	0	0	copy fasta	PRSS2	chr7	142765970	142779560
PRSS2_chr7_142765970_142779560	0/0	c0009	744	1	0	1	0	0	0	copy fasta	PRSS2	chr7	142765970	142779560
PRSS2_chr7_142765970_142779560	0/0	c0010	744	1	1	0	0	0	0	copy fasta	PRSS2	chr7	142765970	142779560
PRSS2_chr7_142765970_142779560	0/0	c0011	744	1	1	0	0	0	0	copy fasta	PRSS2	chr7	142765970	142779560
PRSS2_chr7_142765970_142779560	0/0	c0012	744	1	0	1	0	0	0	copy fasta	PRSS2	chr7	142765970	142779560
PRSS2_chr7_142765970_142779560	0/0	c0013	744	1	0	0	1	0	0	copy fasta	PRSS2	chr7	142765970	142779560
PRSS2_chr7_142765970_142779560	0/0	c0014	744	1	0	0	0	0	1	copy fasta	PRSS2	chr7	142765970	142779560
PRSS2_chr7_142765970_142779560	0/0	c0015	744	1	0	0	1	0	0	copy fasta	PRSS2	chr7	142765970	142779560
PRSS2_chr7_142765970_142779560	0/0	c0016	744	1	0	1	0	0	0	copy fasta	PRSS2	chr7	142765970	142779560
PRSS33_chr16_2778953_2792560	1/1	c0001	843	327	61	65	149	13	37	copy fasta	PRSS33	chr16	2778953	2792560