JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRSS33_chr16_2778953_2792560	0/0	c0002	843	51	39	6	3	0	3	copy fasta	PRSS33	chr16	2778953	2792560
PRSS33_chr16_2778953_2792560	0/0	c0003	843	6	0	3	0	3	0	copy fasta	PRSS33	chr16	2778953	2792560
PRSS33_chr16_2778953_2792560	0/0	c0004	843	1	0	0	1	0	0	copy fasta	PRSS33	chr16	2778953	2792560
PRSS33_chr16_2778953_2792560	0/0	c0005	843	1	0	0	1	0	0	copy fasta	PRSS33	chr16	2778953	2792560
PRSS35_chr6_83507534_83530704	0/1	c0001	1242	324	61	72	148	10	32	copy fasta	PRSS35	chr6	83507534	83530704
PRSS35_chr6_83507534_83530704	0/0	c0002	1242	85	14	9	49	2	11	copy fasta	PRSS35	chr6	83507534	83530704
PRSS35_chr6_83507534_83530704	0/0	c0003	1242	11	11	0	0	0	0	copy fasta	PRSS35	chr6	83507534	83530704
PRSS35_chr6_83507534_83530704	1/0	c0004	1242	5	0	1	0	2	1	copy fasta	PRSS35	chr6	83507534	83530704
PRSS35_chr6_83507534_83530704	0/0	c0005	1242	4	4	0	0	0	0	copy fasta	PRSS35	chr6	83507534	83530704
PRSS35_chr6_83507534_83530704	0/0	c0006	1242	2	2	0	0	0	0	copy fasta	PRSS35	chr6	83507534	83530704
PRSS35_chr6_83507534_83530704	0/0	c0007	1242	2	0	0	2	0	0	copy fasta	PRSS35	chr6	83507534	83530704
PRSS35_chr6_83507534_83530704	0/0	c0008	1242	1	1	0	0	0	0	copy fasta	PRSS35	chr6	83507534	83530704
PRSS35_chr6_83507534_83530704	0/0	c0009	1242	1	1	0	0	0	0	copy fasta	PRSS35	chr6	83507534	83530704
PRSS35_chr6_83507534_83530704	0/0	c0010	1242	1	0	0	1	0	0	copy fasta	PRSS35	chr6	83507534	83530704
PRSS35_chr6_83507534_83530704	0/0	c0011	1242	1	0	1	0	0	0	copy fasta	PRSS35	chr6	83507534	83530704
PRSS35_chr6_83507534_83530704	0/0	c0012	1242	1	0	0	0	1	0	copy fasta	PRSS35	chr6	83507534	83530704
PRSS35_chr6_83507534_83530704	0/0	c0013	1242	1	0	1	0	0	0	copy fasta	PRSS35	chr6	83507534	83530704
PRSS35_chr6_83507534_83530704	0/0	c0014	1242	1	0	0	0	1	0	copy fasta	PRSS35	chr6	83507534	83530704
PRSS36_chr16_31133926_31155066	0/0	c0001	2568	153	11	44	81	9	8	copy fasta	PRSS36	chr16	31133926	31155066
PRSS36_chr16_31133926_31155066	0/0	c0002	2568	120	36	33	23	3	25	copy fasta	PRSS36	chr16	31133926	31155066
PRSS36_chr16_31133926_31155066	1/0	c0003	2568	26	24	0	1	0	0	copy fasta	PRSS36	chr16	31133926	31155066
PRSS36_chr16_31133926_31155066	0/0	c0004	2568	5	5	0	0	0	0	copy fasta	PRSS36	chr16	31133926	31155066
PRSS36_chr16_31133926_31155066	0/0	c0005	2568	5	5	0	0	0	0	copy fasta	PRSS36	chr16	31133926	31155066
PRSS36_chr16_31133926_31155066	0/0	c0006	2568	3	3	0	0	0	0	copy fasta	PRSS36	chr16	31133926	31155066
PRSS36_chr16_31133926_31155066	0/1	c0007	2568	3	0	0	0	2	0	copy fasta	PRSS36	chr16	31133926	31155066
PRSS36_chr16_31133926_31155066	0/0	c0008	2568	2	2	0	0	0	0	copy fasta	PRSS36	chr16	31133926	31155066
PRSS36_chr16_31133926_31155066	0/0	c0009	2568	1	1	0	0	0	0	copy fasta	PRSS36	chr16	31133926	31155066
PRSS36_chr16_31133926_31155066	0/0	c0010	2568	1	0	1	0	0	0	copy fasta	PRSS36	chr16	31133926	31155066
PRSS36_chr16_31133926_31155066	0/0	c0011	2568	1	0	0	1	0	0	copy fasta	PRSS36	chr16	31133926	31155066
PRSS36_chr16_31133926_31155066	0/0	c0012	2568	1	1	0	0	0	0	copy fasta	PRSS36	chr16	31133926	31155066
PRSS36_chr16_31133926_31155066	0/0	c0013	2568	1	0	1	0	0	0	copy fasta	PRSS36	chr16	31133926	31155066
PRSS36_chr16_31133926_31155066	0/0	c0014	2568	1	0	1	0	0	0	copy fasta	PRSS36	chr16	31133926	31155066
PRSS36_chr16_31133926_31155066	0/0	c0015	2568	1	1	0	0	0	0	copy fasta	PRSS36	chr16	31133926	31155066
PRSS36_chr16_31133926_31155066	0/0	c0016	2568	1	0	0	1	0	0	copy fasta	PRSS36	chr16	31133926	31155066
PRSS36_chr16_31133926_31155066	0/0	c0017	2568	1	0	0	0	0	1	copy fasta	PRSS36	chr16	31133926	31155066
PRSS36_chr16_31133926_31155066	0/0	c0018	2568	1	0	0	1	0	0	copy fasta	PRSS36	chr16	31133926	31155066
PRSS36_chr16_31133926_31155066	0/0	c0019	2568	1	0	0	1	0	0	copy fasta	PRSS36	chr16	31133926	31155066
PRSS36_chr16_31133926_31155066	0/0	c0020	2568	1	0	0	1	0	0	copy fasta	PRSS36	chr16	31133926	31155066
PRSS36_chr16_31133926_31155066	0/0	c0021	2568	1	1	0	0	0	0	copy fasta	PRSS36	chr16	31133926	31155066
PRSS37_chr7_141831300_141846485	0/0	c0001	708	247	28	44	142	8	25	copy fasta	PRSS37	chr7	141831300	141846485
PRSS37_chr7_141831300_141846485	1/1	c0002	708	153	56	23	49	10	13	copy fasta	PRSS37	chr7	141831300	141846485
PRSS37_chr7_141831300_141846485	0/0	c0003	708	3	3	0	0	0	0	copy fasta	PRSS37	chr7	141831300	141846485
PRSS37_chr7_141831300_141846485	0/0	c0004	759	1	0	0	1	0	0	copy fasta	PRSS37	chr7	141831300	141846485
PRSS37_chr7_141831300_141846485	0/0	c0005	708	1	1	0	0	0	0	copy fasta	PRSS37	chr7	141831300	141846485
PRSS37_chr7_141831300_141846485	0/0	c0006	708	1	1	0	0	0	0	copy fasta	PRSS37	chr7	141831300	141846485
PRSS37_chr7_141831300_141846485	0/0	c0007	708	1	0	1	0	0	0	copy fasta	PRSS37	chr7	141831300	141846485
PRSS37_chr7_141831300_141846485	0/0	c0008	708	1	1	0	0	0	0	copy fasta	PRSS37	chr7	141831300	141846485
PRSS38_chr1_227810675_227851470	0/0	c0001	981	175	36	26	69	8	36	copy fasta	PRSS38	chr1	227810675	227851470
PRSS38_chr1_227810675_227851470	1/1	c0002	981	105	24	19	53	3	4	copy fasta	PRSS38	chr1	227810675	227851470
PRSS38_chr1_227810675_227851470	0/0	c0003	981	51	0	10	30	4	7	copy fasta	PRSS38	chr1	227810675	227851470