JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRSS38_chr1_227810675_227851470	0/0	c0004	981	30	0	1	27	2	0	copy fasta	PRSS38	chr1	227810675	227851470
PRSS38_chr1_227810675_227851470	0/0	c0005	981	13	0	0	13	0	0	copy fasta	PRSS38	chr1	227810675	227851470
PRSS38_chr1_227810675_227851470	0/0	c0006	981	10	9	1	0	0	0	copy fasta	PRSS38	chr1	227810675	227851470
PRSS38_chr1_227810675_227851470	0/0	c0007	981	8	0	6	2	0	0	copy fasta	PRSS38	chr1	227810675	227851470
PRSS38_chr1_227810675_227851470	0/0	c0008	981	8	8	0	0	0	0	copy fasta	PRSS38	chr1	227810675	227851470
PRSS38_chr1_227810675_227851470	0/0	c0009	981	6	4	2	0	0	0	copy fasta	PRSS38	chr1	227810675	227851470
PRSS38_chr1_227810675_227851470	0/0	c0010	981	5	0	0	5	0	0	copy fasta	PRSS38	chr1	227810675	227851470
PRSS38_chr1_227810675_227851470	0/0	c0011	981	5	0	5	0	0	0	copy fasta	PRSS38	chr1	227810675	227851470
PRSS38_chr1_227810675_227851470	0/0	c0012	981	4	0	4	0	0	0	copy fasta	PRSS38	chr1	227810675	227851470
PRSS38_chr1_227810675_227851470	0/0	c0013	981	4	4	0	0	0	0	copy fasta	PRSS38	chr1	227810675	227851470
PRSS38_chr1_227810675_227851470	0/0	c0014	981	3	0	2	0	1	0	copy fasta	PRSS38	chr1	227810675	227851470
PRSS38_chr1_227810675_227851470	0/0	c0015	981	3	3	0	0	0	0	copy fasta	PRSS38	chr1	227810675	227851470
PRSS38_chr1_227810675_227851470	0/0	c0016	981	3	3	0	0	0	0	copy fasta	PRSS38	chr1	227810675	227851470
PRSS38_chr1_227810675_227851470	0/0	c0017	981	2	0	0	1	0	1	copy fasta	PRSS38	chr1	227810675	227851470
PRSS38_chr1_227810675_227851470	0/0	c0018	981	1	1	0	0	0	0	copy fasta	PRSS38	chr1	227810675	227851470
PRSS38_chr1_227810675_227851470	0/0	c0019	981	1	0	1	0	0	0	copy fasta	PRSS38	chr1	227810675	227851470
PRSS38_chr1_227810675_227851470	0/0	c0020	981	1	1	0	0	0	0	copy fasta	PRSS38	chr1	227810675	227851470
PRSS38_chr1_227810675_227851470	0/0	c0021	981	1	0	0	1	0	0	copy fasta	PRSS38	chr1	227810675	227851470
PRSS38_chr1_227810675_227851470	0/0	c0022	981	1	0	0	1	0	0	copy fasta	PRSS38	chr1	227810675	227851470
PRSS38_chr1_227810675_227851470	0/0	c0023	981	1	1	0	0	0	0	copy fasta	PRSS38	chr1	227810675	227851470
PRSS38_chr1_227810675_227851470	0/0	c0024	981	1	1	0	0	0	0	copy fasta	PRSS38	chr1	227810675	227851470
PRSS38_chr1_227810675_227851470	0/0	c0025	981	1	0	0	1	0	0	copy fasta	PRSS38	chr1	227810675	227851470
PRSS38_chr1_227810675_227851470	0/0	c0026	981	1	0	1	0	0	0	copy fasta	PRSS38	chr1	227810675	227851470
PRSS38_chr1_227810675_227851470	0/0	c0027	981	1	0	0	1	0	0	copy fasta	PRSS38	chr1	227810675	227851470
PRSS38_chr1_227810675_227851470	0/0	c0028	981	1	1	0	0	0	0	copy fasta	PRSS38	chr1	227810675	227851470
PRSS38_chr1_227810675_227851470	0/0	c0029	981	1	0	0	1	0	0	copy fasta	PRSS38	chr1	227810675	227851470
PRSS38_chr1_227810675_227851470	0/0	c0030	981	1	0	0	1	0	0	copy fasta	PRSS38	chr1	227810675	227851470
PRSS38_chr1_227810675_227851470	0/0	c0031	981	1	0	0	1	0	0	copy fasta	PRSS38	chr1	227810675	227851470
PRSS38_chr1_227810675_227851470	0/0	c0032	981	1	0	0	1	0	0	copy fasta	PRSS38	chr1	227810675	227851470
PRSS3_chr9_33790561_33804231	0/1	c0001	744	351	75	62	169	11	33	copy fasta	PRSS3	chr9	33790561	33804231
PRSS3_chr9_33790561_33804231	0/0	c0002	741	67	6	20	22	6	13	copy fasta	PRSS3	chr9	33790561	33804231
PRSS3_chr9_33790561_33804231	1/0	c0003	744	4	3	0	0	0	0	copy fasta	PRSS3	chr9	33790561	33804231
PRSS3_chr9_33790561_33804231	0/0	c0004	744	1	0	0	0	1	0	copy fasta	PRSS3	chr9	33790561	33804231
PRSS3_chr9_33790561_33804231	0/0	c0005	744	1	0	0	1	0	0	copy fasta	PRSS3	chr9	33790561	33804231
PRSS41_chr16_2793470_2810304	1/1	c0001	918	366	71	65	174	13	41	copy fasta	PRSS41	chr16	2793470	2810304
PRSS41_chr16_2793470_2810304	0/0	c0002	918	28	4	4	20	0	0	copy fasta	PRSS41	chr16	2793470	2810304
PRSS41_chr16_2793470_2810304	0/0	c0003	918	6	5	1	0	0	0	copy fasta	PRSS41	chr16	2793470	2810304
PRSS41_chr16_2793470_2810304	0/0	c0004	918	6	6	0	0	0	0	copy fasta	PRSS41	chr16	2793470	2810304
PRSS41_chr16_2793470_2810304	0/0	c0005	918	3	3	0	0	0	0	copy fasta	PRSS41	chr16	2793470	2810304
PRSS41_chr16_2793470_2810304	0/0	c0006	918	3	3	0	0	0	0	copy fasta	PRSS41	chr16	2793470	2810304
PRSS41_chr16_2793470_2810304	0/0	c0007	918	3	3	0	0	0	0	copy fasta	PRSS41	chr16	2793470	2810304
PRSS41_chr16_2793470_2810304	0/0	c0008	906	3	0	2	0	1	0	copy fasta	PRSS41	chr16	2793470	2810304
PRSS41_chr16_2793470_2810304	0/0	c0009	918	1	0	0	1	0	0	copy fasta	PRSS41	chr16	2793470	2810304
PRSS41_chr16_2793470_2810304	0/0	c0010	918	1	1	0	0	0	0	copy fasta	PRSS41	chr16	2793470	2810304
PRSS41_chr16_2793470_2810304	0/0	c0011	918	1	0	0	1	0	0	copy fasta	PRSS41	chr16	2793470	2810304
PRSS41_chr16_2793470_2810304	0/0	c0012	918	1	1	0	0	0	0	copy fasta	PRSS41	chr16	2793470	2810304
PRSS41_chr16_2793470_2810304	0/0	c0013	918	1	0	0	0	0	1	copy fasta	PRSS41	chr16	2793470	2810304
PRSS41_chr16_2793470_2810304	0/0	c0014	918	1	0	1	0	0	0	copy fasta	PRSS41	chr16	2793470	2810304
PRSS41_chr16_2793470_2810304	0/0	c0015	918	1	1	0	0	0	0	copy fasta	PRSS41	chr16	2793470	2810304
PRSS41_chr16_2793470_2810304	0/0	c0016	918	1	0	1	0	0	0	copy fasta	PRSS41	chr16	2793470	2810304